A Framework for Data-Driven Stochastic Disease Spread Simulations

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Documentation for package ‘SimInf’ version 2.0.0

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SimInf-package A Framework for Stochastic Disease Spread Simulations
demo_model Generate a model for demonstration
distance_matrix Create distance matrix
events_SISe3 Scheduled events example data
infected Infected
infected-method Infected
plot Plot 'siminf_model'
plot-method Plot 'siminf_model'
plot-methods Plot 'siminf_model'
prevalence Prevalence
prevalence-method Prevalence
run Run siminf stochastic simulation algorithm
run-method Run siminf stochastic simulation algorithm
run_outer Run 'siminf_model' on scaled parameters
run_outer-method Run 'siminf_model' on scaled parameters
scheduled_events Create a '"scheduled_events"' object
scheduled_events-class Class '"scheduled_events"'
show,scheduled_events-methods Brief summary of 'scheduled_events'
show,siminf_model-methods Brief summary of 'siminf_model'
show-method Brief summary of 'scheduled_events'
show-method Brief summary of 'siminf_model'
SimInf A Framework for Stochastic Disease Spread Simulations
siminf_model Create a 'siminf_model'
siminf_model-class Class '"siminf_model"'
SISe Create a SISe model
SISe-class Class '"SISe"'
SISe3 Create a SISe3 model
SISe3-class Class '"SISe3"'
SISe3_sp Create a SISe3_sp model
SISe3_sp-class Class '"SISe3_sp"'
SISe_sp Create a 'SISe_sp' model
SISe_sp-class Class '"SISe_sp"'
summary,scheduled_events-methods Summary of 'scheduled_events'
summary,siminf_model-methods Summary of 'siminf_model'
summary-method Summary of 'scheduled_events'
summary-method Summary of 'siminf_model'
susceptible Susceptible
susceptible-method Susceptible
u0_SISe3 Example data to initialize a model