Tropical Fisheries Analysis with R

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Documentation for package ‘TropFishR’ version 1.0.0

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Bhattacharya Bhattacharya's method
bream bream data
catchCurve Catch curve
date2yeardec Date - Year conversion
ELEFAN ELEFAN
ELEFAN_GA ELEFAN_GA
ELEFAN_SA ELEFAN_SA
emperor Emperor data
gillnet Gillnet data
gillnetfit Millar's original gillnet selectivity fitting function
goatfish Yellowstriped goatfish data
growth_length_age Estimation of growth parameter using length-at-age data
growth_tagging Growth from tagging data
haddock Haddock data
hake Hake data
lfqFitCurves Fitting VBGF growth curves through lfq data
lfqRestructure Restructuring of length frequency data
M_empirical Empirical formulas for the estimation of natural mortality
plot.Bhattacharya Bhattacharya plot
plot.catchCurve Plotting catch curve
plot.lfq Plotting of length frequency data (with VBGF curves)
plot.predict_mod Plotting prediction models yield per recruit and Thompson & Bell
plot.prod_mod Plotting production models
plot.prod_mod_ts Plotting time series production models
plot.recruitment Plot of recruitment patterns
plot.select Selectivity plot
plot.select_Millar Millar's selectivity plot
plot.VPA VPA plot
powell_wetherall Powell-Wetherall method
predict_mod Prediction models
prod_mod Production models
prod_mod_ts Production models with time series fitting
rcurves_Millar Predict gillnet selectivity (old Millar method)
recruitment Recruitment patterns
rtypes_Millar Millar's selectivity types
select Selectivity model
select_Millar Millar's selectivity model
select_ogive Selectivity patterns
shrimps Shrimp data
stock_sim Stock simulation
synCAA1 Synthetic Catch-at-age data I
synCAA2 Synthetic Catch-at-age data II
synCPUE Synthetical catch per unit of effort (CPUE) dataset
synLFQ1 Synthetic length-frequency data I
synLFQ2 Synthetic length frequency data II
synLFQ3 Synthetic length frequency data III
synLFQ4 Synthetic length-frequency data IV (with seasonal oscillation)
synLFQ5 Synthetic length-frequency data V (without seasonal oscillation)
tilapia Tilapia data
trammelnet Trammel net data
trawl_fishery_Java Data from the trawl fishery off the North coast of Java
VBGF Von Bertalanffy Growth function (VBGF)
VPA Virtual Population Analysis (VPA)
whiting Whiting data
yeardec2date Year - Date conversion
ypr Yield per recruit
ypr_sel Yield per recruit with selection ogive
Z_BevertonHolt Beverton & Holt's Z-Equations
Z_CPUE Estimate Z from CPUE data