* using log directory 'd:/Rcompile/CRANpkg/local/3.3/Causata.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'Causata/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'Causata' version '4.2-0' * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: 'doMC' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Causata' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE BinaryCut: no visible global function definition for 'quantile' CleanNaFromContinuousFunction: no visible global function definition for 'median' CleanNaFromContinuousFunction: no visible global function definition for 'na.omit' GetMetadata.Connect: no visible global function definition for 'dbGetQuery' GetRawData.Connect: no visible global function definition for 'dbGetQuery' Linearity: no visible global function definition for 'median' PredictivePowerCv: no visible global function definition for 'sd' ReadCausataCsv: no visible global function definition for 'read.csv' ToPmml.GlmnetModelDefinition: no visible global function definition for 'coef' ToPmml.GlmnetModelDefinition: no visible global function definition for 'terms.formula' ValidateModel: no visible global function definition for 'predict' predict.GlmnetModelDefinition: no visible global function definition for 'model.matrix' predict.GlmnetModelDefinition: no visible binding for global variable 'contrasts' predict.GlmnetModelDefinition: no visible global function definition for 'predict' Undefined global functions or variables: coef contrasts dbGetQuery median model.matrix na.omit predict quantile read.csv sd terms.formula Consider adding importFrom("stats", "coef", "contrasts", "median", "model.matrix", "na.omit", "predict", "quantile", "sd", "terms.formula") importFrom("utils", "read.csv") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in Makefiles ... NOTE Found the following Makefile(s) without a final LF: inst/doc/Makefile Some 'make' programs ignore lines not ending in LF. * checking for GNU extensions in Makefiles ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... NOTE The following files look like leftovers/mistakes: 'Causata-vignette.log' Please remove them from your package. The following directory looks like a leftover from 'knitr': 'figure' Please remove from your package. * checking examples ... [14s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [68s] OK Running 'testBinaryCut.R' [4s] Running 'testBinaryPredictor.R' [4s] Running 'testCleanNaFromContinuous.R' [4s] Running 'testCleanNaFromFactor.R' [3s] Running 'testDiscretize.R' [3s] Running 'testFocalPointQuery.R' [4s] Running 'testGetStratifiedSample.R' [3s] Running 'testMergeLevels.R' [3s] Running 'testModelDefinition.R' [3s] Running 'testPredictivePower.R' [3s] Running 'testPreprocess.R' [3s] Running 'testQuery.R' [3s] Running 'testQueryFunctions.R' [3s] Running 'testReliableModelCreation.R' [3s] Running 'testReliableVariableCreation.R' [3s] Running 'testToPmml.R' [7s] Running 'testTransformationReplay.R' [3s] Running 'testUploadGlmnetModel.R' [3s] Running 'testWoe.R' [3s] Running 'utils.R' [0s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [63s] OK * checking PDF version of manual ... OK * DONE Status: 5 NOTEs