* using log directory 'd:/Rcompile/CRANpkg/local/3.3/EMC.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'EMC/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'EMC' version '1.3' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'EMC' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'MASS' 'mvtnorm' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File 'EMC/R/zzz.R': .onLoad calls: packageStartupMessage("##\n", "## Evolutionary Monte Carlo Package (EMC)\n", "##\n", "## Functionality: random walk Metropolis, general Metropolis-Hastings\n", "## parallel tempering, target oriented EMC (TOEMC), temperature ladder\n", "## construction and placement\n", "##\n", "## Use: \"help(package = EMC)\" at the R prompt for more info\n", "##\n", "## Copyright (C) 2006-", this.year, " Gopi Goswami\n", "##\n", "## Created by: Gopi Goswami \n", "## Maintained by: Gopi Goswami \n", "##\n") See section 'Good practice' in '?.onAttach'. .placeTempers.do.1: no visible global function definition for 'runif' ARHatIS: no visible global function definition for 'var' CigarShapedFuncGenerator1 : logTarDensFunc: no visible global function definition for 'dmvnorm' CigarShapedFuncGenerator1 : propNewFunc: no visible global function definition for 'rnorm' CigarShapedFuncGenerator2 : logTarDensFunc: no visible global function definition for 'dmvnorm' CigarShapedFuncGenerator2 : propNewFunc: no visible global function definition for 'rt' CigarShapedFuncGenerator2 : logPropDensFunc: no visible global function definition for 'dt' ISObj: no visible global function definition for 'var' MCObj: no visible global function definition for 'acf' VShapedFuncGenerator : logTarDensFunc : : no visible global function definition for 'dmvnorm' VShapedFuncGenerator : MHPropNewFunc: no visible global function definition for 'rnorm' WShapedFuncGenerator : logTarDensFunc : : no visible global function definition for 'dmvnorm' WShapedFuncGenerator : MHPropNewFunc: no visible global function definition for 'rnorm' buildLadder: no visible global function definition for 'plot' buildLadder: no visible global function definition for 'abline' threeDimNormalFuncGenerator : logTarDensFunc: no visible global function definition for 'dmvnorm' threeDimNormalFuncGenerator : propNewFunc: no visible global function definition for 'mvrnorm' threeDimNormalFuncGenerator : propNewFunc: no visible global function definition for 'rnorm' twentyModeFuncGenerator: no visible global function definition for 'read.table' twentyModeFuncGenerator : logTarDensFunc : : no visible global function definition for 'dmvnorm' twentyModeFuncGenerator : MHPropNewFunc: no visible global function definition for 'rnorm' uniModeFuncGenerator : logTarDensFunc: no visible global function definition for 'dmvnorm' uniModeFuncGenerator : MHPropNewFunc: no visible global function definition for 'rnorm' Undefined global functions or variables: abline acf dmvnorm dt mvrnorm plot read.table rnorm rt runif var Consider adding importFrom("graphics", "abline", "plot") importFrom("stats", "acf", "dt", "rnorm", "rt", "runif", "var") importFrom("utils", "read.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [0s] OK ** running examples for arch 'x64' ... [0s] OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs