* using log directory 'd:/Rcompile/CRANpkg/local/3.3/GAMBoost.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'GAMBoost/DESCRIPTION' ... OK
* this is package 'GAMBoost' version '1.2-3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GAMBoost' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  'parallel' 'snowfall'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: 'Matrix'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Calls with DUP:
   .C("get_min_score_dev_binary_index", x.linear, as.integer(length(y)), 
       as.integer(componentwise.no), as.integer(nrow(x.linear)), 
       subset.index, linpen.index, as.double(y), as.double(actual.mu), 
       as.double(actual.eta), as.double(D), as.double(weights), 
       double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]), 
       double(componentwise.no), index = integer(1), score = double(componentwise.no), 
       dev = double(1), DUP = FALSE)
   .C("calc_dev_binary_index", x.linear, as.integer(length(y)), 
       as.integer(componentwise.no), as.integer(nrow(x.linear)), 
       subset.index, linpen.index, as.double(y), as.double(actual.mu), 
       as.double(actual.eta), as.double(D), as.double(weights), 
       double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]), 
       double(componentwise.no), double(componentwise.no), res = double(componentwise.no), 
       DUP = FALSE)
   .C("pre_sum_index", x.linear, as.integer(length(D)), as.integer(componentwise.no), 
       as.integer(nrow(x.linear)), subset.index, linpen.index, as.double(D), 
       as.double(weights), res = double(componentwise.no), DUP = FALSE)
   .C("get_min_score_dev_gaussian_index", x.linear, as.integer(length(y)), 
       as.integer(componentwise.no), as.integer(nrow(x.linear)), 
       subset.index, linpen.index, as.double(y), as.double(actual.mu), 
       as.double(actual.eta), as.double(D), as.double(weights), 
       double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]), 
       pre.sum, index = integer(1), score = double(componentwise.no), 
       dev = double(1), DUP = FALSE)
   .C("get_min_score_dev_general_index", x.linear, as.integer(length(y)), 
       as.integer(componentwise.no), as.integer(nrow(x.linear)), 
       subset.index, linpen.index, as.double(y), as.double(actual.mu), 
       as.double(actual.eta), as.double(D), as.double(weights), 
       double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]), 
       double(componentwise.no), index = integer(1), score = double(componentwise.no), 
       beta.delta = double(1), DUP = FALSE)
DUP is no longer supported and will be ignored.
* checking R code for possible problems ... NOTE
GAMBoost: no visible global function definition for 'binomial'
GAMBoost: no visible global function definition for 'gaussian'
GAMBoost: no visible global function definition for 'poisson'
GAMBoost: no visible binding for global variable 'sd'
GAMBoost: no visible global function definition for 'Matrix'
calc.confidence.bands: no visible global function definition for
  'predict'
cv.GAMBoost: no visible global function definition for 'binomial'
cv.GAMBoost : eval.fold: no visible global function definition for
  'predict'
cv.GAMBoost: no visible global function definition for 'mclapply'
cv.GAMBoost: no visible binding for global variable 'var'
estimPVal: no visible global function definition for 'mclapply'
plot.GAMBoost: no visible global function definition for 'plot'
plot.GAMBoost: no visible global function definition for 'lines'
Undefined global functions or variables:
  Matrix binomial gaussian lines mclapply plot poisson predict sd var
Consider adding
  importFrom("graphics", "lines", "plot")
  importFrom("stats", "binomial", "gaussian", "poisson", "predict", "sd",
             "var")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... [11s] OK
** running examples for arch 'x64' ... [11s] OK
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs