* using log directory 'd:/Rcompile/CRANpkg/local/3.3/GPrank.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'GPrank/DESCRIPTION' ... OK
* this is package 'GPrank' version '0.1.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GPrank' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'GPrank-Ex.R' failed
The error most likely occurred in:

> ### Name: createDatabase
> ### Title: Building SQLite database
> ### Aliases: createDatabase
> ### Keywords: database
> 
> ### ** Examples
> 
> BF=c(3,10,2)
> FoldChange=c(0.5,3,5)
> dbParams=list("BF"=BF,"Fold change"=FoldChange)
> identifiers=c("geneA","geneB","geneC")
> dbInfo=list(database_name="testdb","database_params"=dbParams,"identifiers"=identifiers)
> figuresPath="figures/"
> multi=1
> createDatabase(dbInfo,figuresPath,multi)
Warning: RSQLite::dbGetPreparedQuery() is deprecated, please switch to DBI::dbGetQuery(params = bind.data).
Warning: Named parameters not used in query: name, species, source, platform, desc, save_location, figure_filename
Warning: Named parameters not used in query: dname
Warning: Named parameters not used in query: did, class, source, desc
Warning: Named parameters not used in query: ac, did
Warning: Named parameters not used in query: probe
Warning: Named parameters not used in query: probe_names
Warning: Named parameters not used in query: gene_id, alias_id, alias
Warning: Named parameters not used in query: gene_id, alias_id, alias
Warning: Named parameters not used in query: gene_id, alias_id, alias
Warning: Named parameters not used in query: probe
Warning: Named parameters not used in query: gene_id, dataset_id, regulator_name
Warning: Named parameters not used in query: regulator_name
Warning: Named parameters not used in query: dataset_id, regulator_id, loop_variable, model_translation, number_of_parameters, parameter_names, producer, timestamp, description, name
Warning: Named parameters not used in query: name, dataset_id, regulator_id, loop_variable, model_translation
Warning: Named parameters not used in query: probe
Warning: Named parameters not used in query: probe_names
Warning: Named parameters not used in query: gene_id, experiment_id, log_likelihood, baseline_log_likelihood, params
Warning: Named parameters not used in query: probe
Warning: Named parameters not used in query: gene_id, dataset_id, regulator_name
Warning: Named parameters not used in query: regulator_name
Warning: Named parameters not used in query: dataset_id, regulator_id, loop_variable, model_translation, number_of_parameters, parameter_names, producer, timestamp, description, name
Warning: Named parameters not used in query: name, dataset_id, regulator_id, loop_variable, model_translation
Warning: Named parameters not used in query: probe
Warning: Named parameters not used in query: probe_names
Warning: Named parameters not used in query: gene_id, experiment_id, log_likelihood, baseline_log_likelihood, params
Warning: Named parameters not used in query: filename, name, description, priority
Warning: Named parameters not used in query: filename, name
Warning: Named parameters not used in query: experiment_id, figure_id
Warning: Named parameters not used in query: filename, name, description, priority
Warning: Named parameters not used in query: filename, name
Warning: Named parameters not used in query: experiment_id, figure_id
Warning: Named parameters not used in query: parent_id, name
Warning: Named parameters not used in query: name, parent_id
Error in rsqlite_bind_rows(res@ptr, params) : 
  Query requires 1 params; 2 supplied.
Calls: createDatabase ... <Anonymous> -> db_bind -> rsqlite_bind_rows -> .Call
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Warning: Named parameters not used in query: probe
Warning: Named parameters not used in query: probe_names
Warning: Named parameters not used in query: gene_id, experiment_id, log_likelihood, baseline_log_likelihood, params
Warning: Named parameters not used in query: probe
Warning: Named parameters not used in query: gene_id, dataset_id, regulator_name
Warning: Named parameters not used in query: regulator_name
Warning: Named parameters not used in query: dataset_id, regulator_id, loop_variable, model_translation, number_of_parameters, parameter_names, producer, timestamp, description, name
Warning: Named parameters not used in query: name, dataset_id, regulator_id, loop_variable, model_translation
Warning: Named parameters not used in query: probe
Warning: Named parameters not used in query: probe_names
Warning: Named parameters not used in query: gene_id, experiment_id, log_likelihood, baseline_log_likelihood, params
Warning: Named parameters not used in query: filename, name, description, priority
Warning: Named parameters not used in query: filename, name
Warning: Named parameters not used in query: experiment_id, figure_id
Warning: Named parameters not used in query: filename, name, description, priority
Warning: Named parameters not used in query: filename, name
Warning: Named parameters not used in query: experiment_id, figure_id
Warning: Named parameters not used in query: parent_id, name
Warning: Named parameters not used in query: name, parent_id

Error: processing vignette 'vignette.Rnw' failed with diagnostics:
 chunk 8 
Error in rsqlite_bind_rows(res@ptr, params) : 
  Query requires 1 params; 2 supplied.
Execution halted

* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 1 WARNING