* using log directory 'd:/Rcompile/CRANpkg/local/3.3/HAP.ROR.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'HAP.ROR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HAP.ROR' version '1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HAP.ROR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'ape' which was already attached by Depends.
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'ape' 'hash'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
AIC: no visible global function definition for 'hash'
AIC: no visible global function definition for 'values'
AIC: no visible global function definition for 'contr.treatment'
AIC: no visible global function definition for 'values<-'
AIC: no visible global function definition for 'glm'
AIC: no visible binding for global variable 'binomial'
AIC: no visible global function definition for 'fitted'
ODS.ror: no visible global function definition for 'write.table'
ODS.ror: no visible global function definition for 'hash'
ODS.ror: no visible global function definition for 'values<-'
ODS.ror: no visible global function definition for 'keys'
ODS.ror: no visible global function definition for 'values'
ODS.ror: no visible global function definition for 'read.tree'
ODS.ror: no visible global function definition for 'colorRampPalette'
ODS.ror: no visible global function definition for 'plot'
ODS.ror: no visible global function definition for 'nodelabels'
cc.sim: no visible global function definition for 'hash'
cc.sim: no visible global function definition for 'values<-'
cc.sim: no visible global function definition for 'values'
cc.sim: no visible global function definition for 'rbinom'
collapse: no visible global function definition for 'hash'
collapse: no visible global function definition for 'values<-'
collapse: no visible global function definition for 'keys'
collapse: no visible global function definition for 'values'
deletion: no visible global function definition for 'hash'
deletion: no visible global function definition for 'values<-'
deletion: no visible global function definition for 'keys'
deletion: no visible global function definition for 'values'
deletion: no visible global function definition for 'pchisq'
grp.list: no visible global function definition for 'hash'
grp.list: no visible global function definition for 'values'
Undefined global functions or variables:
  binomial colorRampPalette contr.treatment fitted glm hash keys
  nodelabels pchisq plot rbinom read.tree values values<- write.table
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("graphics", "plot")
  importFrom("stats", "binomial", "contr.treatment", "fitted", "glm",
             "pchisq", "rbinom")
  importFrom("utils", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [12s] OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs