* using log directory 'd:/Rcompile/CRANpkg/local/3.3/IBHM.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'IBHM/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'IBHM' version '1.1-11' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'IBHM' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'compiler' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ConfigureIBHM : : no visible global function definition for 'dnorm' FindActiv: no visible global function definition for 'sd' OptimizeActivCMAES: no visible global function definition for 'runif' OptimizeActivNM: no visible global function definition for 'optim' OptimizeActivNM: no visible global function definition for 'runif' OptimizeAllParams : goal: no visible global function definition for 'relist' OptimizeAllParams: no visible global function definition for 'optim' OptimizeAllParams: no visible global function definition for 'relist' OptimizeAllWeights: no visible global function definition for 'optim' OptimizeScalCMAES: no visible global function definition for 'runif' OptimizeScalNM: no visible global function definition for 'optim' OptimizeScalNM: no visible global function definition for 'runif' OptimizeWeights: no visible global function definition for 'optim' TrainIBHM: no visible global function definition for 'enableJIT' ValidationSC : : no visible global function definition for 'predict' group.by.samplesPerDim: no visible global function definition for 'sd' summary.IBHM: no visible global function definition for 'predict' summary.IBHM: no visible global function definition for 'sd' summary.IBHM: no visible global function definition for 'cor' Undefined global functions or variables: cor dnorm enableJIT optim predict relist runif sd Consider adding importFrom("stats", "cor", "dnorm", "optim", "predict", "runif", "sd") importFrom("utils", "relist") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [33s] OK ** running examples for arch 'x64' ... [29s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [92s] OK Running 'ibhm.tests.R' [91s] Running 'utils.R' [0s] ** running tests for arch 'x64' ... [74s] OK Running 'ibhm.tests.R' [73s] Running 'utils.R' [0s] * checking PDF version of manual ... OK * DONE Status: 2 NOTEs