* using log directory 'd:/Rcompile/CRANpkg/local/3.3/PKgraph.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'PKgraph/DESCRIPTION' ... OK
* this is package 'PKgraph' version '1.7'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'RGtk2' 'gWidgetsRGtk2' 'cairoDevice' 'lattice' 'rggobi' 'ggplot2'
  'proto'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PKgraph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'RGtk2' 'gWidgetsRGtk2'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'cairoDevice'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ErrorMessage: no visible global function definition for 'gmessage'
PKgraph: no visible global function definition for 'assignInNamespace'
PKgraph: no visible global function definition for 'gwindow'
PKgraph: no visible global function definition for 'gmenu'
PKgraph: no visible global function definition for 'gtoolbar'
PKgraph: no visible global function definition for 'ggroup'
PKgraph: no visible global function definition for 'gnotebook'
PKgraph: no visible global function definition for 'gpanedgroup'
PKgraph: no visible global function definition for 'glabel'
PKgraph: no visible global function definition for 'gtable'
PKgraph: no visible global function definition for 'gstatusbar'
addList1: no visible global function definition for 'formula'
addList2: no visible global function definition for 'formula'
checkforPKModel: no visible global function definition for 'gmessage'
cleanFigureButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
com.hist.okButtonHandler: no visible global function definition for
  'ggraphics'
com.hist.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
com.hist.okButtonHandler: no visible global function definition for
  'as.formula'
com.hist.okButtonHandler.0125: no visible global function definition
  for 'as.formula'
com.hist.okButtonHandler.0125: no visible global function definition
  for 'ggraphics'
com.hist.okButtonHandler.0125: no visible binding for global variable
  'pk.dialog.notebook'
com.map.okButtonHandler: no visible global function definition for
  'gtable'
com.scatter.okButtonHandler: no visible global function definition for
  'ggraphics'
com.scatter.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
com.scatter.okButtonHandler.0125: no visible global function definition
  for 'as.formula'
com.scatter.okButtonHandler.0125: no visible global function definition
  for 'ggraphics'
com.scatter.okButtonHandler.0125: no visible binding for global
  variable 'pk.dialog.notebook'
com.time.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
com.time.okButtonHandler: no visible global function definition for
  'ggraphics'
com.time.okButtonHandler.back: no visible global function definition
  for 'as.formula'
com.time.okButtonHandler.back: no visible global function definition
  for 'ggraphics'
com.time.okButtonHandler.back: no visible binding for global variable
  'pk.dialog.notebook'
compare.pred.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
configDataHandler: no visible global function definition for 'gmessage'
configDirHandler: no visible global function definition for 'gfile'
configFigureHandler: no visible global function definition for
  'gwindow'
configFigureHandler: no visible global function definition for 'ggroup'
configFigureHandler: no visible global function definition for 'gframe'
configFigureHandler: no visible global function definition for
  'glayout'
configFigureHandler: no visible global function definition for 'glabel'
configFigureHandler: no visible global function definition for 'gedit'
configFigureHandler: no visible global function definition for
  'gcheckboxgroup'
configFigureHandler: no visible global function definition for
  'gbutton'
configFormatHandler: no visible global function definition for
  'gwindow'
configFormatHandler: no visible global function definition for 'ggroup'
configFormatHandler: no visible global function definition for 'gframe'
configFormatHandler: no visible global function definition for
  'glayout'
configFormatHandler: no visible global function definition for 'glabel'
configFormatHandler: no visible global function definition for
  'gcheckboxgroup'
configFormatHandler: no visible global function definition for 'gedit'
configFormatHandler: no visible global function definition for
  'gbutton'
extractBootData : <anonymous>: no visible global function definition
  for 'read.table'
extractCddData : <anonymous>: no visible global function definition for
  'read.table'
extractSimData : <anonymous>: no visible global function definition for
  'read.table'
getHistCall: no visible global function definition for 'as.formula'
getPKBwplotCall: no visible global function definition for 'as.formula'
getPKHistCall: no visible global function definition for 'as.formula'
getPKMatrixplotCall: no visible global function definition for
  'plotmatrix'
getPKQqmathCall: no visible global function definition for 'as.formula'
getPKScatterCall: no visible global function definition for
  'as.formula'
getScatterCall: no visible global function definition for 'as.formula'
getScatterCall: no visible global function definition for 'opts'
getScatterCall.back: no visible global function definition for
  'as.formula'
ggobi.diagose: no visible global function definition for 'gwindow'
ggobi.diagose: no visible global function definition for 'ggroup'
ggobi.diagose: no visible global function definition for 'glabel'
ggobi.diagose: no visible global function definition for 'gframe'
ggobi.diagose: no visible global function definition for 'glayout'
ggobi.diagose: no visible global function definition for 'gdroplist'
ggobi.diagose: no visible global function definition for 'gbutton'
ggobi.diagose: no visible global function definition for 'gtable'
ggobi.diagose: no visible global function definition for 'gpanedgroup'
ggobi.map: no visible global function definition for 'gwindow'
ggobi.map: no visible global function definition for 'ggroup'
ggobi.map: no visible global function definition for 'gframe'
ggobi.map: no visible global function definition for 'glayout'
ggobi.map: no visible global function definition for 'gdroplist'
ggobi.map: no visible global function definition for 'gbutton'
ggobiPlotType: no visible global function definition for 'gwindow'
ggobiPlotType: no visible global function definition for 'ggroup'
ggobiPlotType: no visible global function definition for 'gframe'
ggobiPlotType: no visible global function definition for 'glayout'
ggobiPlotType: no visible global function definition for 'gdroplist'
ggobiPlotType: no visible global function definition for 'gbutton'
helpHandler: no visible global function definition for 'vignette'
model.cov.okButtonHandler: no visible global function definition for
  'ggraphics'
model.cov.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.gof.okButtonHandler: no visible global function definition for
  'ggraphics'
model.gof.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.ind.okButtonHandler: no visible global function definition for
  'ggraphics'
model.ind.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.para.okButtonHandler: no visible global function definition for
  'ggraphics'
model.para.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.random.okButtonHandler: no visible global function definition for
  'ggraphics'
model.random.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.resid.okButtonHandler: no visible global function definition for
  'ggraphics'
model.resid.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.struct.okButtonHandler: no visible global function definition for
  'ggraphics'
model.struct.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
openDataHandler: no visible global function definition for 'gwindow'
openDataHandler: no visible global function definition for 'ggroup'
openDataHandler: no visible global function definition for 'gframe'
openDataHandler: no visible global function definition for 'glayout'
openDataHandler: no visible global function definition for 'glabel'
openDataHandler: no visible global function definition for 'gdroplist'
openDataHandler: no visible global function definition for 'gbutton'
openDataHandler : <anonymous>: no visible global function definition
  for 'gtable'
openDataHandler : <anonymous>: no visible global function definition
  for 'gfile'
openDataHandler : <anonymous> : <anonymous>: no visible binding for
  '<<-' assignment to 'test'
openDataHandler : <anonymous> : <anonymous>: no visible binding for
  global variable 'test'
openDataHandler : <anonymous> : <anonymous>: no visible global function
  definition for 'gtable'
pk.boot.sum: no visible global function definition for 'gmessage'
pk.boot.vis: no visible global function definition for 'gmessage'
pk.factor: no visible global function definition for 'gmessage'
pk.heat.menu: no visible global function definition for 'gmessage'
pk.matrix.menu: no visible global function definition for 'gmessage'
pk.model.cov: no visible global function definition for 'gmessage'
pk.model.gof: no visible global function definition for 'gmessage'
pk.model.ind: no visible global function definition for 'gmessage'
pk.model.para: no visible global function definition for 'gmessage'
pk.model.random: no visible global function definition for 'gmessage'
pk.model.resid: no visible global function definition for 'gmessage'
pk.model.struct: no visible global function definition for 'gmessage'
pk.outlier.psn: no visible global function definition for 'gmessage'
pk.outlier.vis: no visible global function definition for 'gmessage'
pk.para.menu: no visible global function definition for 'gmessage'
pk.sim: no visible global function definition for 'gmessage'
pk.time.menu: no visible global function definition for 'gmessage'
pk.tri.menu: no visible global function definition for 'gmessage'
project.restore: no visible global function definition for 'gfile'
project.restore : <anonymous> : <anonymous>: no visible global function
  definition for 'gtable'
psn.bootstrap: no visible global function definition for 'read.csv'
psn.bootstrap: no visible binding for global variable
  'minimization.successful'
psn.bootstrap: no visible binding for global variable
  'covariance.step.successful'
psn.bootstrap: no visible binding for global variable
  'covariance.step.warnings'
psn.bootstrap: no visible binding for global variable
  'estimate.near.boundary'
psn.bootstrap: no visible global function definition for 'density'
psn.bootstrap: no visible global function definition for 'quantile'
psn.bootstrap: no visible global function definition for 'ggraphics'
psn.bootstrap: no visible binding for global variable
  'pk.dialog.notebook'
psn.bootstrap: no visible global function definition for 'hist'
psn.bootstrap: no visible global function definition for 'lines'
psn.bootstrap: no visible global function definition for 'abline'
psn.bootstrap: no visible global function definition for 'text'
psn.bootstrap: no visible global function definition for 'par'
psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'pk.dialog.notebook'
psn.bootstrap.sum.okButtonHandler: no visible global function
  definition for 'read.csv'
psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'minimization.successful'
psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'covariance.step.successful'
psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'covariance.step.warnings'
psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'estimate.near.boundary'
psn.bootstrap.sum.okButtonHandler: no visible global function
  definition for 'density'
psn.bootstrap.sum.okButtonHandler: no visible global function
  definition for 'quantile'
psn.bootstrap.sum.okButtonHandler: no visible global function
  definition for 'ggraphics'
psn.bootstrap.sum.okButtonHandler: no visible global function
  definition for 'par'
psn.bootstrap.vis.okButtonHandler: no visible global function
  definition for 'read.csv'
psn.bootstrap.vis.okButtonHandler: no visible global function
  definition for 'gwindow'
psn.bootstrap.vis.okButtonHandler: no visible global function
  definition for 'ggroup'
psn.bootstrap.vis.okButtonHandler: no visible global function
  definition for 'ggraphics'
psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'pk.dialog.notebook'
psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'ID'
psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'resampleID'
psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'para'
psn.bootstrap.vis.okButtonHandler : <anonymous>: no visible global
  function definition for 'var'
psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'VAR'
psn.cdd: no visible global function definition for 'read.csv'
psn.cdd: no visible binding for global variable
  'minimization.successful'
psn.cdd: no visible binding for global variable
  'covariance.step.successful'
psn.cdd: no visible binding for global variable
  'covariance.step.warnings'
psn.cdd: no visible binding for global variable
  'estimate.near.boundary'
psn.cdd: no visible binding for global variable 'outside.n.sd'
psn.outlier.okButtonHandler: no visible global function definition for
  'ggraphics'
psn.outlier.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
psn.outlier.okButtonHandler: no visible binding for global variable
  'ID'
psn.outlier.okButtonHandler: no visible binding for global variable
  'cook.scores'
psn.outlier.okButtonHandler: no visible binding for global variable
  'cov.ratios'
restoreHandler: no visible global function definition for 'gfile'
restoreHandler : <anonymous> : <anonymous>: no visible global function
  definition for 'gtable'
saveHandler: no visible global function definition for 'gfile'
saveHandler : <anonymous>: no visible global function definition for
  'write.table'
saveImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
saveImageHandler: no visible global function definition for 'gfile'
saveImageHandler : <anonymous> : <anonymous>: no visible global
  function definition for 'dev.off'
saveImageHandler.matrix: no visible binding for global variable
  'pk.dialog.notebook'
saveImageHandler.matrix: no visible global function definition for
  'gfile'
saveImageHandler.matrix : <anonymous> : <anonymous>: no visible global
  function definition for 'dev.off'
saveImageHandler.pkmodel: no visible binding for global variable
  'pk.dialog.notebook'
saveImageHandler.pkmodel: no visible global function definition for
  'gfile'
saveImageHandler.pkmodel : <anonymous> : <anonymous>: no visible global
  function definition for 'dev.off'
saveProjectHandler: no visible global function definition for 'gfile'
selectDataDialog: no visible global function definition for 'gmessage'
selectDataDialog: no visible global function definition for 'gwindow'
selectDataDialog: no visible global function definition for 'ggroup'
selectDataDialog: no visible global function definition for 'glabel'
selectDataDialog: no visible global function definition for 'gframe'
selectDataDialog: no visible global function definition for 'gtable'
selectDataDialog: no visible global function definition for 'gbutton'
selectDataDialog: no visible binding for global variable 'Theoph'
selectDataDialog: no visible global function definition for
  'addHandlerClicked'
setHandler: no visible global function definition for 'gfile'
subset.okButtonHandler: no visible global function definition for
  'gwindow'
subset.okButtonHandler: no visible global function definition for
  'gframe'
subset.okButtonHandler: no visible global function definition for
  'glayout'
subset.okButtonHandler: no visible global function definition for
  'gdroplist'
subset.okButtonHandler: no visible global function definition for
  'gedit'
subset.okButtonHandler: no visible global function definition for
  'gbutton'
subset.okButtonHandler : <anonymous>: no visible global function
  definition for 'gtable'
summary.bi.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.bi.okButtonHandler: no visible global function definition for
  'ggraphics'
summary.bi.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.heat.okButtonHandler: no visible global function definition for
  'ggraphics'
summary.heat.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.heat.okButtonHandler: no visible global function definition for
  'par'
summary.heat.okButtonHandler: no visible global function definition for
  'heatmap'
summary.matrix.ggobiImageHandler: no visible binding for global
  variable 'pk.dialog.notebook'
summary.matrix.okButtonHandler: no visible global function definition
  for 'ggraphics'
summary.matrix.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.para.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.para.okButtonHandler: no visible global function definition for
  'as.formula'
summary.para.okButtonHandler: no visible binding for global variable
  'Theoph'
summary.para.okButtonHandler: no visible global function definition for
  'ggraphics'
summary.para.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.tri.okButtonHandler: no visible global function definition for
  'ggraphics'
summary.tri.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.tri.okButtonHandler: no visible global function definition for
  'as.formula'
summary.uni.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.uni.okButtonHandler: no visible global function definition for
  'ggraphics'
summary.uni.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
translateList: no visible global function definition for 'gmessage'
val.okButtonHandler: no visible global function definition for
  'ggraphics'
val.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
validation.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
vis.outlier.okButtonHandler: no visible global function definition for
  'gwindow'
vis.outlier.okButtonHandler: no visible global function definition for
  'ggroup'
vis.outlier.okButtonHandler: no visible global function definition for
  'ggraphics'
vis.outlier.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
vis.outlier.okButtonHandler: no visible binding for global variable
  'runID'
vis.outlier.okButtonHandler: no visible binding for global variable
  'deleteID'
vis.outlier.okButtonHandler: no visible binding for global variable
  'ID'
vis.outlier.okButtonHandler: no visible binding for global variable
  'para'
vis.outlier.okButtonHandler: no visible binding for global variable
  'resampleID'
vis.outlier.okButtonHandler: no visible global function definition for
  'namerows'
vis.outlier.okButtonHandler: no visible global function definition for
  'melt'
vis.outlier.okButtonHandler: no visible global function definition for
  'ddply'
vis.outlier.okButtonHandler: no visible binding for global variable
  'variable'
vis.outlier.okButtonHandler: no visible global function definition for
  'rescaler'
vis.outlier.okButtonHandler: no visible binding for global variable
  'value'
vis.outlier.okButtonHandler: no visible binding for global variable
  'rng'
vis.outlier.okButtonHandler: no visible global function definition for
  'dist'
vis.outlier.okButtonHandler: no visible global function definition for
  'cmdscale'
vis.outlier.okButtonHandler: no visible binding for global variable
  'cor1'
vis.outlier.okButtonHandler: no visible binding for global variable
  'cor2'
Undefined global functions or variables:
  ID Theoph VAR abline addHandlerClicked as.formula assignInNamespace
  cmdscale cook.scores cor1 cor2 cov.ratios covariance.step.successful
  covariance.step.warnings ddply deleteID density dev.off dist
  estimate.near.boundary formula gbutton gcheckboxgroup gdroplist gedit
  gfile gframe ggraphics ggroup glabel glayout gmenu gmessage gnotebook
  gpanedgroup gstatusbar gtable gtoolbar gwindow heatmap hist lines
  melt minimization.successful namerows opts outside.n.sd par para
  pk.dialog.notebook plotmatrix quantile read.csv read.table resampleID
  rescaler rng runID test text value var variable vignette write.table
Consider adding
  importFrom("datasets", "Theoph")
  importFrom("grDevices", "dev.off")
  importFrom("graphics", "abline", "hist", "lines", "par", "text")
  importFrom("stats", "as.formula", "cmdscale", "density", "dist",
             "formula", "heatmap", "quantile", "var")
  importFrom("utils", "assignInNamespace", "read.csv", "read.table",
             "vignette", "write.table")
to your NAMESPACE file.
* checking Rd files ... NOTE
prepare_Rd: PKgraph.Rd:11-13: Dropping empty section \arguments
prepare_Rd: PKgraph.Rd:17-19: Dropping empty section \examples
prepare_Rd: pkdata.Rd:9-11: Dropping empty section \format
prepare_Rd: pkdata.Rd:14-16: Dropping empty section \examples
prepare_Rd: pkdata2.Rd:9-11: Dropping empty section \format
prepare_Rd: pkdata2.Rd:14-16: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [9s] OK
* checking PDF version of manual ... OK
* DONE
Status: 5 NOTEs