* using log directory 'd:/Rcompile/CRANpkg/local/3.3/PopGenKit.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'PopGenKit/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PopGenKit' version '1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PopGenKit' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'stats' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
PICalc: no visible global function definition for 'read.table'
PICalc: no visible global function definition for 'write.table'
batchconvert: no visible global function definition for 'write.table'
batchconvertjack: no visible global function definition for
  'write.table'
batchjacklociArp: no visible global function definition for
  'write.table'
batchjacklociArpRANDOM: no visible global function definition for
  'write.table'
batchrecodeBi: no visible global function definition for 'write.table'
bootstrapHet: no visible global function definition for 'read.table'
bootstrapHet: no visible global function definition for 'write.table'
bootstrapHet: no visible global function definition for 'quantile'
bootstrapHet_byloc: no visible global function definition for
  'read.table'
bootstrapHet_byloc: no visible global function definition for
  'write.table'
bootstrapHet_byloc: no visible global function definition for
  'quantile'
combineBsim: no visible global function definition for 'read.delim'
combineBsim: no visible global function definition for 'write.table'
convert: no visible global function definition for 'read.delim'
convert: no visible global function definition for 'write.table'
convertjack: no visible global function definition for 'read.delim'
convertjack: no visible global function definition for 'write.table'
freqPCA: no visible global function definition for 'read.table'
freqPCA: no visible global function definition for 'write.table'
inputBottleSim: no visible global function definition for 'read.delim'
inputBottleSim: no visible global function definition for 'write.table'
jacklociArp: no visible global function definition for 'read.table'
jacklociArp: no visible global function definition for 'write.table'
jacklociArpRANDOM: no visible global function definition for
  'read.table'
jacklociArpRANDOM: no visible global function definition for
  'write.table'
jackmsat: no visible global function definition for 'sd'
jackmsatpop: no visible global function definition for 'read.delim'
jackmsatpop: no visible global function definition for 'write.table'
outputBottleSim: no visible global function definition for 'read.delim'
outputBottleSim: no visible global function definition for
  'write.table'
outputBottleSim: no visible binding for global variable 'final.vec'
outputBottleSim: no visible binding for global variable 'kvec'
popgen: no visible global function definition for 'read.table'
popgen: no visible global function definition for 'write.table'
recodeBi: no visible global function definition for 'read.table'
recodeBi: no visible global function definition for 'write.table'
Undefined global functions or variables:
  final.vec kvec quantile read.delim read.table sd write.table
Consider adding
  importFrom("stats", "quantile", "sd")
  importFrom("utils", "read.delim", "read.table", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs