* using log directory 'd:/Rcompile/CRANpkg/local/3.3/RSiena.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'RSiena/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RSiena' version '1.1-232'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RSiena' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  'MASS' 'codetools' 'lattice' 'network' 'parallel' 'tcltk' 'xtable'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported object imported by a ':::' call: 'utils:::edit.data.frame'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
AnnouncePhase: no visible global function definition for 'tkdelete'
AnnouncePhase: no visible global function definition for 'tkinsert'
AnnouncePhase: no visible global function definition for 'tkconfigure'
CalculateDerivative3: no visible global function definition for 'var'
CalculateDerivative3: no visible global function definition for 'cov'
CalculateDerivative3: no visible global function definition for 'cor'
CalculateDerivative3 : <anonymous>: no visible global function
  definition for 'acf'
DisplayDeviations: no visible global function definition for 'tkdelete'
DisplayDeviations: no visible global function definition for 'tkinsert'
DisplayIteration: no visible global function definition for 'tkdelete'
DisplayIteration: no visible global function definition for 'tkinsert'
DisplayIteration: no visible global function definition for 'tcl'
DisplayTheta: no visible global function definition for 'tkdelete'
DisplayTheta: no visible global function definition for 'tkinsert'
DisplayThetaAutocor: no visible global function definition for
  'tkdelete'
DisplayThetaAutocor: no visible global function definition for
  'tkinsert'
FiniteDifferences: no visible global function definition for
  'clusterCall'
InitReports: no visible global function definition for
  'packageDescription'
TestOutput: no visible global function definition for 'pchisq'
coDyadCovar: no visible global function definition for 'is'
confint.mu: no visible global function definition for 'qchisq'
confint.sig: no visible global function definition for 'qchisq'
confint.sig: no visible global function definition for 'uniroot'
createEffects: no visible binding for global variable 'allEffects'
createProgressBar: no visible global function definition for
  'tkconfigure'
doIterations: no visible global function definition for 'clusterCall'
doPhase1or3Iterations: no visible global function definition for
  'clusterCall'
effectsDocumentation: no visible binding for global variable
  'allEffects'
effectsDocumentation: no visible global function definition for
  'browseURL'
getBehaviorStartingVals: no visible binding for global variable 'var'
getBehaviorStartingVals: no visible global function definition for
  'var'
getEffects: no visible global function definition for 'var'
getInternals: no visible global function definition for 'read.csv'
getInternals : <anonymous>: no visible global function definition for
  'findGlobals'
getInternals : <anonymous>: no visible global function definition for
  'findLocals'
getProgressBar: no visible global function definition for 'tclvalue'
getProgressBar: no visible global function definition for 'tkcget'
getRSienaRDocumentation : <anonymous>: no visible global function
  definition for 'getFromNamespace'
getRSienaRDocumentation : <anonymous>: no visible global function
  definition for 'findGlobals'
getRSienaRDocumentation : <anonymous>: no visible global function
  definition for 'findLocals'
getRSienaRDocumentation: no visible global function definition for
  'write.csv'
iwlsm.default: no visible global function definition for 'lm.wfit'
iwlsm.default: no visible global function definition for 'hatvalues'
iwlsm.default: no visible global function definition for 'lm'
iwlsm.default: no visible global function definition for 'pnorm'
iwlsm.default: no visible global function definition for 'dnorm'
iwlsm.default: no visible global function definition for 'mad'
iwlsm.default: no visible global function definition for 'median'
iwlsm.formula: no visible global function definition for
  'model.response'
iwlsm.formula: no visible global function definition for 'model.offset'
iwlsm.formula: no visible global function definition for 'model.matrix'
iwlsm.formula: no visible global function definition for
  'model.weights'
iwlsm.formula: no visible global function definition for '.getXlevels'
maxlik: no visible global function definition for 'optimize'
maxlikec: no visible global function definition for 'parRapply'
mhstep : mhtryinsertdiag: no visible global function definition for
  'runif'
mhstep : mhtrycanceldiag: no visible global function definition for
  'runif'
mhstep : mhinsdelperm: no visible global function definition for
  'runif'
networkExtraction: no visible global function definition for
  'network.initialize'
networkExtraction: no visible global function definition for 'as'
networkExtraction: no visible global function definition for
  'network.edgelist'
networkExtraction: no visible global function definition for 'network'
phase1.2: no visible global function definition for 'var'
phase1.2: no visible global function definition for 'cov'
phase1.2: no visible global function definition for 'cor'
phase2.1: no visible global function definition for 'tkconfigure'
plot.sienaGOF: no visible binding for global variable 'median'
plot.sienaGOF: no visible global function definition for 'var'
plot.sienaGOF: no visible global function definition for
  'trellis.par.get'
plot.sienaGOF: no visible global function definition for
  'trellis.par.set'
plot.sienaGOF : panelFunction: no visible global function definition
  for 'panel.violin'
plot.sienaGOF : panelFunction: no visible global function definition
  for 'panel.bwplot'
plot.sienaGOF : panelFunction: no visible global function definition
  for 'panel.xyplot'
plot.sienaGOF : panelFunction: no visible global function definition
  for 'panel.text'
plot.sienaGOF: no visible global function definition for 'bwplot'
plot.sienaMeta: no visible global function definition for 'xyplot'
plot.sienaMeta : <anonymous>: no visible global function definition for
  'panel.xyplot'
plot.sienaMeta : <anonymous>: no visible global function definition for
  'panel.abline'
plot.sienaMeta : <anonymous>: no visible global function definition for
  'qnorm'
plot.sienaTimeTest : panel.cor: no visible global function definition
  for 'par'
plot.sienaTimeTest : panel.cor: no visible global function definition
  for 'cor'
plot.sienaTimeTest : panel.cor: no visible global function definition
  for 'strwidth'
plot.sienaTimeTest : panel.cor: no visible global function definition
  for 'text'
plot.sienaTimeTest: no visible global function definition for 'pairs'
plot.sienaTimeTest: no visible binding for global variable
  'panel.smooth'
plot.sienaTimeTest : <anonymous>: no visible global function definition
  for 'qnorm'
plot.sienaTimeTest: no visible global function definition for 'xyplot'
plot.sienaTimeTest : <anonymous> : <anonymous>: no visible global
  function definition for 'panel.xyplot'
plot.sienaTimeTest : <anonymous>: no visible global function definition
  for 'panel.xyplot'
plot.sienaTimeTest : <anonymous>: no visible global function definition
  for 'panel.abline'
predict.iwlsm: no visible global function definition for 'predict.lm'
print.iwlsm: no visible global function definition for 'naprint'
print.siena: no visible global function definition for 'write.table'
print.sienaBayesFit: no visible global function definition for 'cov'
print.sienaBayesFit: no visible binding for global variable 'sd'
print.sienaDependent: no visible global function definition for
  'write.table'
print.sienaMeta : <anonymous>: no visible global function definition
  for 'pt'
print.summary.iwlsm: no visible binding for global variable 'quantile'
print.summary.iwlsm: no visible global function definition for
  'quantile'
print.summary.iwlsm: no visible global function definition for
  'naprint'
print.summary.sienaBayesFit: no visible global function definition for
  'cov'
print.summary.sienaFit: no visible global function definition for
  'pchisq'
print.summary.sienaMeta: no visible global function definition for
  'packageDescription'
print.summary.sienaMeta : <anonymous>: no visible global function
  definition for 'pt'
print01Report: no visible global function definition for
  'packageDescription'
proc2subphase: no visible global function definition for 'lm'
proc2subphase: no visible global function definition for 'coef'
profdev.mu: no visible global function definition for 'optimize'
profdev.sig: no visible global function definition for 'optimize'
psi.iwlsm: no visible global function definition for 'weighted.mean'
readInFiles: no visible global function definition for 'read.table'
readInFiles: no visible global function definition for 'read.paj'
reformatDerivs: no visible global function definition for 'as'
robmon: no visible global function definition for 'tkconfigure'
robmon: no visible global function definition for 'getFromNamespace'
robmon: no visible global function definition for 'packageDescription'
robmon: no visible global function definition for 'makeCluster'
robmon: no visible global function definition for 'clusterCall'
robmon: no visible global function definition for 'clusterSetRNGStream'
robmon: no visible global function definition for 'runif'
robmon: no visible global function definition for 'tkdelete'
se.contrast.iwlsm: no visible global function definition for
  'contr.helmert'
sessionFromFile: no visible global function definition for 'read.csv'
sessionFromFile: no visible global function definition for 'read.delim'
sessionFromFile: no visible global function definition for 'read.table'
sessionFromFile: no visible global function definition for
  'tkmessageBox'
setProgressBar: no visible global function definition for 'tkconfigure'
setProgressBar: no visible global function definition for 'tcl'
siena.table : signif: no visible global function definition for 'qnorm'
siena.table: no visible global function definition for 'write.table'
siena01Gui : addFile: no visible global function definition for
  'tclvalue'
siena01Gui : addFile: no visible global function definition for
  'tkgetOpenFile'
siena01Gui : addFile: no visible global function definition for
  'as.tclObj'
siena01Gui : addFile: no visible global function definition for 'tkset'
siena01Gui : addFile: no visible global function definition for 'tcl'
siena01Gui : addTableRow: no visible global function definition for
  'tkinsert'
siena01Gui : addTableRow: no visible global function definition for
  'tkwidget'
siena01Gui : addTableRow: no visible global function definition for
  'tkwindow.configure'
siena01Gui : addTableRow: no visible global function definition for
  'tkbind'
siena01Gui : addTableRow : <anonymous>: no visible global function
  definition for 'tcl'
siena01Gui : addTableRow: no visible global function definition for
  'tkconfigure'
siena01Gui : applyFn: no visible global function definition for
  'tkmessageBox'
siena01Gui : applyFn: no visible global function definition for
  'tclvalue'
siena01Gui : clearFn : <anonymous>: no visible global function
  definition for 'tkset'
siena01Gui : deleteTableRow: no visible global function definition for
  'tkwindow.configure'
siena01Gui : deleteTableRow: no visible global function definition for
  'tcl'
siena01Gui : deleteTableRow: no visible global function definition for
  'tkdelete'
siena01Gui : editFile: no visible global function definition for
  'tclvalue'
siena01Gui : editFile: no visible global function definition for 'tcl'
siena01Gui : editFile: no visible global function definition for
  'tkmessageBox'
siena01Gui : editFile: no visible global function definition for 'edit'
siena01Gui : editFile: no visible global function definition for
  'tkfocus'
siena01Gui : fromFileFn: no visible global function definition for
  'tclvalue'
siena01Gui : fromFileFn: no visible global function definition for
  'tkgetOpenFile'
siena01Gui : fromFileContFn: no visible global function definition for
  'tkmessageBox'
siena01Gui : helpFn: no visible global function definition for
  'RShowDoc'
siena01Gui : myStop: no visible global function definition for
  'tkmessageBox'
siena01Gui : myStop: no visible global function definition for
  'tclvalue'
siena01Gui : myStop: no visible global function definition for
  'tkdestroy'
siena01Gui : procSession: no visible global function definition for
  'as.tclObj'
siena01Gui : procSession: no visible global function definition for
  'tkset'
siena01Gui : procSession: no visible global function definition for
  'tcl'
siena01Gui : removeFile: no visible global function definition for
  'tclvalue'
siena01Gui : removeFile: no visible global function definition for
  'tcl'
siena01Gui : removeFile: no visible global function definition for
  'tkmessageBox'
siena01Gui : saveFn: no visible global function definition for
  'tkmessageBox'
siena01Gui : saveFn: no visible global function definition for
  'tclvalue'
siena01Gui : saveFn: no visible global function definition for
  'tkgetSaveFile'
siena01Gui : saveFn: no visible global function definition for
  'write.table'
siena01Gui : savefileFn: no visible global function definition for
  'tclvalue'
siena01Gui : savefileFn: no visible global function definition for
  'tkgetSaveFile'
siena01Gui : sessionFromTcl: no visible global function definition for
  'tclvalue'
siena01Gui : sessionFromTcl: no visible global function definition for
  'tkconfigure'
siena01Gui : sessionFromTcl: no visible global function definition for
  'as.tclObj'
siena01Gui : sessionFromTcl: no visible global function definition for
  'tkget'
siena01Gui : modelFromTcl: no visible global function definition for
  'tclvalue'
siena01Gui : sienaModelOptions : editFn: no visible global function
  definition for 'tclvalue'
siena01Gui : sienaModelOptions : editFn: no visible global function
  definition for 'tcl'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tclvalue'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tkmessageBox'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tcl'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tkfocus'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tksearch'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tkyview'
siena01Gui : sienaModelOptions : modelhelpFn: no visible global
  function definition for 'RShowDoc'
siena01Gui : sienaModelOptions : randomseedFn: no visible global
  function definition for 'tclvalue'
siena01Gui : sienaModelOptions : randomseedFn: no visible global
  function definition for 'tkgrid.forget'
siena01Gui : sienaModelOptions : randomseedFn: no visible global
  function definition for 'tclvalue<-'
siena01Gui : sienaModelOptions : randomseedFn: no visible global
  function definition for 'tkgrid'
siena01Gui : sienaModelOptions : clustersFn: no visible global function
  definition for 'tclvalue'
siena01Gui : sienaModelOptions : clustersFn: no visible global function
  definition for 'tkgrid.forget'
siena01Gui : sienaModelOptions : clustersFn: no visible global function
  definition for 'tclvalue<-'
siena01Gui : sienaModelOptions : clustersFn: no visible global function
  definition for 'tkgrid'
siena01Gui : sienaModelOptions : returnFn: no visible global function
  definition for 'tkmessageBox'
siena01Gui : sienaModelOptions : returnFn: no visible global function
  definition for 'tclvalue'
siena01Gui : sienaModelOptions : returnFn: no visible global function
  definition for 'tkpack.forget'
siena01Gui : sienaModelOptions : returnFn: no visible global function
  definition for 'tkpack'
siena01Gui : sienaModelOptions : showFn: no visible global function
  definition for 'tcl'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tclclose'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkpack.forget'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tclopen'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkpack'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkconfigure'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkgrid'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkgrid.configure'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkdelete'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkinsert'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tclread'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkfocus'
siena01Gui : sienaModelOptions : saveresultsFn: no visible global
  function definition for 'tkmessageBox'
siena01Gui : sienaModelOptions : saveresultsFn: no visible global
  function definition for 'tclvalue'
siena01Gui : sienaModelOptions : saveresultsFn: no visible global
  function definition for 'tkgetSaveFile'
siena01Gui : sienaModelOptions : screenFromModel: no visible global
  function definition for 'tclvalue<-'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkpack.forget'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkframe'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkpack'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkwidget'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkscrollbar'
siena01Gui : sienaModelOptions : <anonymous>: no visible global
  function definition for 'tkxview'
siena01Gui : sienaModelOptions : <anonymous>: no visible global
  function definition for 'tkyview'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tktext'
siena01Gui : sienaModelOptions : <anonymous>: no visible global
  function definition for 'tkset'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkgrid.configure'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tclVar'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tclvalue<-'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'ttkcombobox'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tklabel'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkgrid'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkentry'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkcheckbutton'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tclArray'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tcl'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'as.tclObj'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkbutton'
siena01Gui: no visible global function definition for 'tclRequire'
siena01Gui: no visible global function definition for 'tktoplevel'
siena01Gui: no visible global function definition for 'tkwm.resizable'
siena01Gui: no visible global function definition for 'tkwm.title'
siena01Gui: no visible global function definition for 'tkbind'
siena01Gui: no visible global function definition for 'tkmenu'
siena01Gui: no visible global function definition for 'tkconfigure'
siena01Gui: no visible global function definition for 'tkadd'
siena01Gui : <anonymous>: no visible global function definition for
  'tkdestroy'
siena01Gui: no visible global function definition for 'tkframe'
siena01Gui: no visible global function definition for 'tkpack'
siena01Gui: no visible global function definition for 'tkbutton'
siena01Gui: no visible global function definition for 'tkgrid'
siena01Gui: no visible global function definition for 'tkwidget'
siena01Gui: no visible global function definition for 'tclArray'
siena01Gui: no visible global function definition for 'tkscrollbar'
siena01Gui : <anonymous>: no visible global function definition for
  'tkxview'
siena01Gui : <anonymous>: no visible global function definition for
  'tkyview'
siena01Gui : <anonymous>: no visible global function definition for
  'tkset'
siena01Gui: no visible global function definition for 'tcl'
siena01Gui: no visible global function definition for 'as.tclObj'
siena01Gui : <anonymous>: no visible global function definition for
  'tkwidget'
siena01Gui : <anonymous>: no visible global function definition for
  'tkwindow.configure'
siena01Gui : <anonymous>: no visible global function definition for
  'tkbind'
siena01Gui : <anonymous> : <anonymous>: no visible global function
  definition for 'tcl'
siena01Gui : <anonymous> : <anonymous>: no visible global function
  definition for 'tkXselection.own'
siena01Gui: no visible global function definition for 'tkfocus'
siena07 : exitfn: no visible global function definition for 'tkdestroy'
siena07: no visible global function definition for 'runif'
siena07: no visible global function definition for 'stopCluster'
siena07Gui: no visible global function definition for 'tktoplevel'
siena07Gui: no visible global function definition for 'tkwm.title'
siena07Gui: no visible global function definition for 'tkframe'
siena07Gui: no visible global function definition for 'tkpack'
siena07Gui: no visible global function definition for 'tkbutton'
siena07Gui: no visible global function definition for
  'tkgrid.configure'
siena07Gui: no visible global function definition for 'tklabel'
siena07Gui: no visible global function definition for 'tkentry'
siena07Gui: no visible global function definition for 'ttkprogressbar'
siena07Gui: no visible global function definition for 'tktext'
siena07Gui: no visible global function definition for 'tclVar'
siena07Gui: no visible global function definition for 'tcl'
siena07Gui: no visible global function definition for 'tkinsert'
siena07Gui: no visible global function definition for 'tkgrab.set'
siena07Gui: no visible global function definition for 'tkfocus'
siena08 : dometa: no visible global function definition for 'cor.test'
siena08 : dometa: no visible global function definition for 'pnorm'
siena08 : dometa: no visible global function definition for 'pchisq'
sienaDataCreateFromSession : validateNamesession: no visible binding
  for global variable 'network.size'
sienaDataCreateFromSession : validateNamesession: no visible global
  function definition for 'network.size'
sienaDataCreateFromSession: no visible global function definition for
  'network.size'
sienaDataCreateFromSession: no visible global function definition for
  'as.matrix.network'
sienaDataCreateFromSession: no visible global function definition for
  'list.edge.attributes'
sienaDataCreateFromSession: no visible global function definition for
  'get.edge.value'
sienaDataCreateFromSession: no visible global function definition for
  'is.directed'
sienaDataCreateFromSession: no visible global function definition for
  'tkmessageBox'
sienaDependent : <anonymous>: no visible global function definition for
  'is'
sienaDependent : <anonymous>: no visible global function definition for
  'as'
sienaGOF : <anonymous>: no visible global function definition for
  'parSapply'
sienaGOF : <anonymous> : <anonymous>: no visible global function
  definition for 'flush.console'
sienaGOF : applyTest: no visible global function definition for
  'cov.rob'
sienaGOF : applyTest: no visible global function definition for 'cov'
sienaGOF : applyTest: no visible global function definition for 'ginv'
sienaGOF : <anonymous>: no visible global function definition for
  'ginv'
sienaGOF : <anonymous>: no visible global function definition for
  'cov.rob'
sienaGOF : <anonymous>: no visible global function definition for 'cov'
sienaGOF: no visible global function definition for 'cov'
sienaGOF: no visible global function definition for 'ginv'
sienaNet : <anonymous>: no visible global function definition for 'is'
sienaNet : <anonymous>: no visible global function definition for 'as'
sienaTimeTest: no visible global function definition for 'cov'
sienaTimeTest: no visible global function definition for 'pchisq'
sienaTimeTest: no visible global function definition for 'pnorm'
sienaTimeTest: no visible global function definition for 'qnorm'
summary.iwlsm: no visible global function definition for 'hatvalues'
summary.iwlsm: no visible global function definition for 'lm'
terminateFRAN: no visible binding for global variable 'sd'
tkErrorMessage: no visible global function definition for
  'tkmessageBox'
unisroot: no visible global function definition for 'uniroot'
varDyadCovar : <anonymous>: no visible global function definition for
  'is'
Undefined global functions or variables:
  .getXlevels RShowDoc acf allEffects as as.matrix.network as.tclObj
  browseURL bwplot clusterCall clusterSetRNGStream coef contr.helmert
  cor cor.test cov cov.rob dnorm edit findGlobals findLocals
  flush.console get.edge.value getFromNamespace ginv hatvalues is
  is.directed list.edge.attributes lm lm.wfit mad makeCluster median
  model.matrix model.offset model.response model.weights naprint
  network network.edgelist network.initialize network.size optimize
  packageDescription pairs panel.abline panel.bwplot panel.smooth
  panel.text panel.violin panel.xyplot par parRapply parSapply pchisq
  pnorm predict.lm pt qchisq qnorm quantile read.csv read.delim
  read.paj read.table runif sd stopCluster strwidth tcl tclArray
  tclRequire tclVar tclclose tclopen tclread tclvalue tclvalue<- text
  tkXselection.own tkadd tkbind tkbutton tkcget tkcheckbutton
  tkconfigure tkdelete tkdestroy tkentry tkfocus tkframe tkget
  tkgetOpenFile tkgetSaveFile tkgrab.set tkgrid tkgrid.configure
  tkgrid.forget tkinsert tklabel tkmenu tkmessageBox tkpack
  tkpack.forget tkscrollbar tksearch tkset tktext tktoplevel tkwidget
  tkwindow.configure tkwm.resizable tkwm.title tkxview tkyview
  trellis.par.get trellis.par.set ttkcombobox ttkprogressbar uniroot
  var weighted.mean write.csv write.table xyplot
Consider adding
  importFrom("graphics", "pairs", "panel.smooth", "par", "strwidth",
             "text")
  importFrom("methods", "as", "is")
  importFrom("stats", ".getXlevels", "acf", "coef", "contr.helmert",
             "cor", "cor.test", "cov", "dnorm", "hatvalues", "lm",
             "lm.wfit", "mad", "median", "model.matrix", "model.offset",
             "model.response", "model.weights", "naprint", "optimize",
             "pchisq", "pnorm", "predict.lm", "pt", "qchisq", "qnorm",
             "quantile", "runif", "sd", "uniroot", "var",
             "weighted.mean")
  importFrom("utils", "RShowDoc", "browseURL", "edit", "flush.console",
             "getFromNamespace", "packageDescription", "read.csv",
             "read.delim", "read.table", "write.csv", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [8s] OK
** running examples for arch 'x64' ... [7s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ... [15s] OK
  Running 'parallel.R' [14s]
  Comparing 'parallel.Rout' to 'parallel.Rout.save' ...145c145
< Version 1.13.0 created on 2015-08-31.
---
> Version 1.7.2 created on March 15, 2013.
147c147
<                     Mark S. Handcock, University of California -- Los Angeles
---
>                     Mark S. Handcock, University of Washington
150d149
<                     Skye Bender-deMoll, University of Washington
  Running 'scripts.R' [1s]
  Comparing 'scripts.Rout' to 'scripts.Rout.save' ... OK
** running tests for arch 'x64' ... [16s] OK
  Running 'parallel.R' [16s]
  Comparing 'parallel.Rout' to 'parallel.Rout.save' ...145c145
< Version 1.13.0 created on 2015-08-31.
---
> Version 1.7.2 created on March 15, 2013.
147c147
<                     Mark S. Handcock, University of California -- Los Angeles
---
>                     Mark S. Handcock, University of Washington
150d149
<                     Skye Bender-deMoll, University of Washington
  Running 'scripts.R' [0s]
  Comparing 'scripts.Rout' to 'scripts.Rout.save' ... OK
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs