* using log directory 'd:/Rcompile/CRANpkg/local/3.3/SpatialExtremes.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'SpatialExtremes/DESCRIPTION' ... OK * this is package 'SpatialExtremes' version '2.0-2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SpatialExtremes' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .brownresnickstderr: no visible global function definition for 'var' .extremaltstderr: no visible global function definition for 'var' .geomgaussstderr: no visible global function definition for 'var' .getTrendSurfCoeffNames: no visible global function definition for 'terms' .schlatherindstderr: no visible global function definition for 'var' .schlatherstderr: no visible global function definition for 'var' .smithstderr: no visible global function definition for 'var' .spatgevstderr: no visible global function definition for 'var' .start.brownresnick: no visible global function definition for 'predict' .start.extremalt: no visible global function definition for 'predict' .start.geomgauss: no visible global function definition for 'predict' .start.nsgeomgauss: no visible global function definition for 'terms' .start.nsgeomgauss: no visible global function definition for 'predict' .start.schlather: no visible global function definition for 'predict' .start.schlatherind: no visible global function definition for 'predict' .start.smith: no visible global function definition for 'predict' TIC.default: no visible global function definition for 'deviance' anova.maxstab: no visible global function definition for 'fitted' anova.maxstab: no visible global function definition for 'deviance' anova.maxstab: no visible global function definition for 'pchisq' anova.spatgev: no visible global function definition for 'fitted' anova.spatgev: no visible global function definition for 'deviance' anova.spatgev: no visible global function definition for 'pchisq' brownresnickform: no visible global function definition for 'update' brownresnickform: no visible global function definition for 'nlminb' brownresnickform: no visible global function definition for 'nlm' brownresnickform: no visible global function definition for 'optim' brownresnickform : ext.coeff: no visible global function definition for 'pnorm' brownresnickform : conc.prob: no visible global function definition for 'rnorm' brownresnickform : conc.prob: no visible global function definition for 'pnorm' brownresnickfull: no visible global function definition for 'nlminb' brownresnickfull: no visible global function definition for 'nlm' brownresnickfull: no visible global function definition for 'optim' brownresnickfull : ext.coeff: no visible global function definition for 'pnorm' brownresnickfull : conc.prob: no visible global function definition for 'rnorm' brownresnickfull : conc.prob: no visible global function definition for 'pnorm' concprob: no visible global function definition for 'quantile' concprob: no visible global function definition for 'points' concprob: no visible global function definition for 'curve' concurrencemap: no visible global function definition for 'cm.colors' concurrencemap: no visible global function definition for 'layout' concurrencemap: no visible global function definition for 'image' concurrencemap: no visible global function definition for 'par' concurrencemap: no visible global function definition for 'plot.new' concurrencemap: no visible global function definition for 'plot.window' concurrencemap: no visible global function definition for 'rect' concurrencemap: no visible global function definition for 'axis' concurrencemap: no visible global function definition for 'box' condmap: no visible global function definition for 'terrain.colors' condmap: no visible global function definition for 'predict' condmap : cond.prob: no visible global function definition for 'pnorm' condmap: no visible global function definition for 'uniroot' condmap: no visible global function definition for 'image' condmap: no visible global function definition for 'contour' covariance: no visible global function definition for 'optimize' covariance: no visible global function definition for 'points' cv: no visible global function definition for 'nlm' cv: no visible global function definition for 'sd' extcoeff : extCoeff: no visible global function definition for 'pnorm' extcoeff: no visible global function definition for 'optimize' extcoeff: no visible global function definition for 'contour' extremaltform: no visible global function definition for 'update' extremaltform: no visible global function definition for 'nlminb' extremaltform: no visible global function definition for 'nlm' extremaltform: no visible global function definition for 'optim' extremaltform : ext.coeff: no visible global function definition for 'pt' extremaltform : conc.prob: no visible global function definition for 'pt' extremaltfull: no visible global function definition for 'nlminb' extremaltfull: no visible global function definition for 'nlm' extremaltfull: no visible global function definition for 'optim' extremaltfull : ext.coeff: no visible global function definition for 'pt' extremaltfull : conc.prob: no visible global function definition for 'pt' fitcopula: no visible global function definition for 'update' fitcopula: no visible global function definition for 'nlminb' fitcopula: no visible global function definition for 'nlm' fitcopula: no visible global function definition for 'optim' fitcopula : ext.coeff: no visible global function definition for 'pt' fitcovariance: no visible global function definition for 'optim' fitcovariance : ext.coeff: no visible global function definition for 'pt' fitcovariance : ext.coeff: no visible global function definition for 'pnorm' fitcovmat: no visible global function definition for 'qnorm' fitcovmat: no visible global function definition for 'optim' fitcovmat : ext.coeff: no visible global function definition for 'pnorm' fitextcoeff: no visible global function definition for 'optimize' fitextcoeff: no visible global function definition for 'ppoints' fitextcoeff: no visible binding for global variable 'var' fitextcoeff: no visible global function definition for 'par' fitextcoeff: no visible global function definition for 'lines' fitextcoeff: no visible global function definition for 'predict' fitextcoeff: no visible global function definition for 'points' fitspatgev: no visible global function definition for 'update' fitspatgev: no visible global function definition for 'nlminb' fitspatgev: no visible global function definition for 'nlm' fitspatgev: no visible global function definition for 'optim' fmadogram: no visible global function definition for 'predict' fmadogram: no visible global function definition for 'quantile' fmadogram: no visible global function definition for 'par' fmadogram: no visible global function definition for 'points' fmadogram: no visible global function definition for 'curve' fmadogram: no visible global function definition for 'plot' gcv: no visible global function definition for 'nlm' gcv: no visible global function definition for 'sd' geomgaussform: no visible global function definition for 'update' geomgaussform: no visible global function definition for 'nlminb' geomgaussform: no visible global function definition for 'nlm' geomgaussform: no visible global function definition for 'optim' geomgaussform : ext.coeff: no visible global function definition for 'pnorm' geomgaussfull: no visible global function definition for 'nlminb' geomgaussfull: no visible global function definition for 'nlm' geomgaussfull: no visible global function definition for 'optim' geomgaussfull : ext.coeff: no visible global function definition for 'pnorm' gevmle: no visible global function definition for 'var' gevmle: no visible global function definition for 'optim' gpdmle: no visible global function definition for 'optim' kriging: no visible global function definition for 'dist' latent: no visible global function definition for 'dist' latent: no visible global function definition for 'update' lmadogram: no visible global function definition for 'terrain.colors' lmadogram: no visible global function definition for 'quantile' lmadogram: no visible global function definition for 'persp' logLik.copula: no visible global function definition for 'fitted' logLik.maxstab: no visible global function definition for 'fitted' madogram: no visible global function definition for 'predict' madogram: no visible global function definition for 'quantile' madogram: no visible global function definition for 'par' madogram: no visible global function definition for 'points' madogram: no visible global function definition for 'curve' madogram: no visible global function definition for 'plot' map: no visible global function definition for 'terrain.colors' map: no visible global function definition for 'predict' map: no visible global function definition for 'image' map: no visible global function definition for 'contour' map.latent: no visible global function definition for 'terrain.colors' map.latent: no visible binding for global variable 'quantile' map.latent: no visible global function definition for 'par' map.latent: no visible global function definition for 'layout' map.latent: no visible global function definition for 'image' map.latent: no visible global function definition for 'contour' map.latent: no visible global function definition for 'points' map.latent: no visible global function definition for 'plot.new' map.latent: no visible global function definition for 'plot.window' map.latent: no visible global function definition for 'rect' map.latent: no visible global function definition for 'axis' map.latent: no visible global function definition for 'box' modeldef.lm : init.fun: no visible global function definition for 'lm' modeldef.lm: no visible global function definition for 'model.matrix' plot.copula: no visible global function definition for 'par' plot.copula: no visible global function definition for 'layout' plot.copula: no visible global function definition for 'predict' plot.copula: no visible binding for global variable 'quantile' plot.copula: no visible global function definition for 'matplot' plot.copula: no visible global function definition for 'curve' plot.copula: no visible global function definition for 'points' plot.copula: no visible global function definition for 'abline' plot.copula: no visible global function definition for 'legend' plot.copula: no visible global function definition for 'plot' plot.maxstab: no visible global function definition for 'par' plot.maxstab: no visible global function definition for 'layout' plot.maxstab: no visible global function definition for 'predict' plot.maxstab: no visible global function definition for 'na.omit' plot.maxstab: no visible binding for global variable 'quantile' plot.maxstab: no visible global function definition for 'matplot' plot.maxstab: no visible global function definition for 'curve' plot.maxstab: no visible global function definition for 'points' plot.maxstab: no visible global function definition for 'plot' plot.maxstab: no visible global function definition for 'text' plot.maxstab: no visible global function definition for 'abline' plot.maxstab: no visible global function definition for 'legend' print.copula: no visible global function definition for 'AIC' print.latent: no visible binding for global variable 'quantile' profile.maxstab: no visible global function definition for 'optim' profile.maxstab: no visible global function definition for 'qchisq' profile.maxstab: no visible global function definition for 'abline' profile2d.maxstab: no visible global function definition for 'optim' profile2d.maxstab: no visible global function definition for 'filled.contour' qqextcoeff: no visible global function definition for 'plot' qqextcoeff: no visible global function definition for 'abline' qqgev: no visible global function definition for 'predict' qqgev: no visible global function definition for 'par' qqgev: no visible global function definition for 'plot' qqgev: no visible global function definition for 'abline' qqgev: no visible global function definition for 'hist' qqgev: no visible global function definition for 'axis' rb: no visible global function definition for 'dist' rcopula: no visible global function definition for 'pnorm' rcopula: no visible global function definition for 'rchisq' rcopula: no visible global function definition for 'pt' rgev: no visible global function definition for 'rexp' rgpd: no visible global function definition for 'rexp' rgpd: no visible global function definition for 'runif' schlatherform: no visible global function definition for 'update' schlatherform: no visible global function definition for 'nlminb' schlatherform: no visible global function definition for 'nlm' schlatherform: no visible global function definition for 'optim' schlatherfull: no visible global function definition for 'nlminb' schlatherfull: no visible global function definition for 'nlm' schlatherfull: no visible global function definition for 'optim' schlatherindform: no visible global function definition for 'update' schlatherindform: no visible global function definition for 'nlminb' schlatherindform: no visible global function definition for 'nlm' schlatherindform: no visible global function definition for 'optim' schlatherindfull: no visible global function definition for 'nlminb' schlatherindfull: no visible global function definition for 'nlm' schlatherindfull: no visible global function definition for 'optim' smithform: no visible global function definition for 'update' smithform: no visible global function definition for 'nlminb' smithform: no visible global function definition for 'nlm' smithform: no visible global function definition for 'optim' smithform : ext.coeff: no visible global function definition for 'pnorm' smithfull: no visible global function definition for 'nlminb' smithfull: no visible global function definition for 'nlm' smithfull: no visible global function definition for 'optim' smithfull : ext.coeff: no visible global function definition for 'pnorm' swiss: no visible global function definition for 'plot' swiss: no visible global function definition for 'lines' swiss: no visible global function definition for 'polygon' swiss: no visible global function definition for 'points' swiss: no visible global function definition for 'text' symbolplot: no visible global function definition for 'layout' symbolplot: no visible global function definition for 'par' symbolplot: no visible global function definition for 'dist' symbolplot: no visible global function definition for 'symbols' symbolplot: no visible global function definition for 'plot' symbolplot: no visible global function definition for 'text' symbolplot: no visible binding for global variable 'median' variogram: no visible global function definition for 'quantile' variogram: no visible global function definition for 'points' variogram: no visible global function definition for 'plot' vdc: no visible global function definition for 'runif' Undefined global functions or variables: AIC abline axis box cm.colors contour curve deviance dist filled.contour fitted hist image layout legend lines lm matplot median model.matrix na.omit nlm nlminb optim optimize par pchisq persp plot plot.new plot.window pnorm points polygon ppoints predict pt qchisq qnorm quantile rchisq rect rexp rnorm runif sd symbols terms terrain.colors text uniroot update var Consider adding importFrom("grDevices", "cm.colors", "terrain.colors") importFrom("graphics", "abline", "axis", "box", "contour", "curve", "filled.contour", "hist", "image", "layout", "legend", "lines", "matplot", "par", "persp", "plot", "plot.new", "plot.window", "points", "polygon", "rect", "symbols", "text") importFrom("stats", "AIC", "deviance", "dist", "fitted", "lm", "median", "model.matrix", "na.omit", "nlm", "nlminb", "optim", "optimize", "pchisq", "pnorm", "ppoints", "predict", "pt", "qchisq", "qnorm", "quantile", "rchisq", "rexp", "rnorm", "runif", "sd", "terms", "uniroot", "update", "var") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [53s] OK ** running examples for arch 'x64' ... [48s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [4s] OK Running 'gradientPllik.R' [4s] ** running tests for arch 'x64' ... [4s] OK Running 'gradientPllik.R' [4s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [32s] OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE