* using log directory 'd:/Rcompile/CRANpkg/local/3.3/VizOR.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'VizOR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'VizOR' version '0.7-9'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'VizOR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
colored: no visible global function definition for 'is'
colored: no visible global function definition for 'rainbow'
controller : summary.draw: no visible global function definition for
  'plot'
panel.plotbraids: no visible global function definition for 'rgb'
panel.prevalence: no visible binding for global variable
  'boxplot.stats'
panel.prevalence: no visible global function definition for 'is'
plotbraids: no visible global function definition for 'is'
plotbraids : limits.and.aspect: no visible global function definition
  for 'modifyList'
predReg: no visible global function definition for 'is'
radarplot: no visible global function definition for 'is'
timeline: no visible binding for global variable 'pdf'
timeline : <anonymous>: no visible global function definition for 'rgb'
timeline: no visible global function definition for 'capture.output'
timeline: no visible global function definition for 'dev.off'
timeline: no visible global function definition for 'glob2rx'
Undefined global functions or variables:
  boxplot.stats capture.output dev.off glob2rx is modifyList pdf plot
  rainbow rgb
Consider adding
  importFrom("grDevices", "boxplot.stats", "dev.off", "pdf", "rainbow",
             "rgb")
  importFrom("graphics", "plot")
  importFrom("methods", "is")
  importFrom("utils", "capture.output", "glob2rx", "modifyList")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'VizOR-Ex.R' failed
The error most likely occurred in:

> ### Name: radarplot
> ### Title: A multidimensional 'Table 1 at-a-glance'
> ### Aliases: radarplot
> ### Keywords: hplot htest
> 
> ### ** Examples
> 
> library(rms)
Loading required package: Hmisc
Loading required package: survival
Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, round.POSIXt, trunc.POSIXt, units

Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

> df <- upData(mtcars,
+              cyl=factor(cyl,levels=2*(2:4),labels=paste(2*(2:4),"cyl", sep="-")),
+              am=factor(am,levels=0:1,labels=c("automatic","manual")),
+              gear=factor(gear,levels=3:5,labels=paste(3:5,"speed", sep="-")),
+              labels=c(
+                mpg="Miles per gallon"
+                ,cyl="Number of cylinders"
+                ,disp="Displacement"
+                ,hp="Gross horsepower"
+                ,drat="Rear axle ratio"
+                ,wt="Weight"
+                ,qsec="1/4 mile time"
+                ,am="Transmission type"
+                ,gear="Number of forward gears"
+                ,carb="Number of carburetors"
+                ),
+              units=c(
+                wt="lb/1000"
+                ,disp="in^3"
+                ,qsec="sec"
+                ),
+              drop='vs'
+              )
Input object size:	 6736 bytes;	 11 variables	 32 observations
Modified variable	cyl
Modified variable	am
Modified variable	gear
Error in Math.factor(x) : 'floor' not meaningful for factors
Calls: upData -> Math.factor
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: lattice
Loading required package: survival
Loading required package: Formula
Loading required package: ggplot2

Attaching package: 'Hmisc'

The following objects are masked from 'package:base':

    format.pval, round.POSIXt, trunc.POSIXt, units

Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Loading required package: grid

Error: processing vignette 'Radar.Rnw' failed with diagnostics:
 chunk 2 (label = PrepareData) 
Error in Math.factor(x) : 'floor' not meaningful for factors
Execution halted

* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE