* using log directory 'd:/Rcompile/CRANpkg/local/3.3/betareg.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'betareg/DESCRIPTION' ... OK * this is package 'betareg' version '3.1-0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'betareg' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [33s] OK * checking differences from 'betareg-Ex.Rout' to 'betareg-Ex.Rout.save' ... OK 138c138 < Number of iterations: 144 (BFGS) + 5 (Fisher scoring) --- > Number of iterations: 147 (BFGS) + 4 (Fisher scoring) 1023c1023 < Number of iterations: 17 (BFGS) + 2 (Fisher scoring) --- > Number of iterations: 17 (BFGS) + 1 (Fisher scoring) Warning message: running command 'diff -bw "D:\temp\RtmpqGmdXn\Rdiffa28987119198d" "D:\temp\RtmpqGmdXn\Rdiffb289853e63e8a"' had status 1 * checking for unstated dependencies in 'tests' ... OK * checking tests ... [21s] OK Running 'betamix.R' [14s] Comparing 'betamix.Rout' to 'betamix.Rout.save' ... OK Running 'betatree.R' [3s] Comparing 'betatree.Rout' to 'betatree.Rout.save' ...65c65 < Number of iterations: 17 (BFGS) + 2 (Fisher scoring) --- > Number of iterations: 17 (BFGS) + 1 (Fisher scoring) Running 'bias.R' [3s] Comparing 'bias.Rout' to 'bias.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... [26s] OK * checking re-building of vignette outputs ... [58s] OK * checking PDF version of manual ... OK * DONE Status: OK