* using log directory 'd:/Rcompile/CRANpkg/local/3.3/blockmodeling.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'blockmodeling/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'blockmodeling' version '0.1.8' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'blockmodeling' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... NOTE 'library' or 'require' calls in package code: 'Matrix' 'sna' Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE gplot1: warning in grep(pat = "block", search()): partial argument match of 'pat' to 'pattern' gplot2: warning in grep(pat = "block", search()): partial argument match of 'pat' to 'pattern' loadnetwork2: warning in grep(patt = "^ *$", x = as.character(line)): partial argument match of 'patt' to 'pattern' loadpajek: warning in grep(patt = "^ *$", x = as.character(line)): partial argument match of 'patt' to 'pattern' savecluster: warning in grep(patt = "w32", x = version["os"]): partial argument match of 'patt' to 'pattern' savematrix: warning in grep(patt = "w32", x = version["os"]): partial argument match of 'patt' to 'pattern' savenetwork: warning in grep(patt = "w32", x = version["os"]): partial argument match of 'patt' to 'pattern' savepajek: warning in grep(patt = "w32", x = version["os"]): partial argument match of 'patt' to 'pattern' savevector: warning in grep(patt = "w32", x = version["os"]): partial argument match of 'patt' to 'pattern' ad: no visible global function definition for 'median' check.these.par: no visible global function definition for 'crit.fun.tmp' check.these.par: no visible binding for global variable 'useM' crit.fun: no visible global function definition for 'crit.fun.tmp' crit.fun: no visible binding for global variable 'useM' find.m: no visible global function definition for 'optimize' gen.crit.fun: no visible global function definition for 'na.omit' gen.crit.fun: no visible binding for global variable 's' genRandomPar: no visible global function definition for 'runif' genRandomParGroups: no visible global function definition for 'runif' gplot1: no visible global function definition for 'gray' gplot1: no visible global function definition for 'gplot' gplot2: no visible global function definition for 'gray' gplot2: no visible global function definition for 'gplot' loadmatrix: no visible global function definition for 'read.table' loadnetwork: no visible global function definition for 'read.table' loadnetwork: no visible global function definition for 'Matrix' loadnetwork2: no visible global function definition for 'read.table' loadnetwork2: no visible global function definition for 'Matrix' loadvector: no visible global function definition for 'read.table' loadvector2: no visible global function definition for 'read.table' opt.par: no visible global function definition for 'opt.par.tmp' opt.random.par: no visible global function definition for 'na.omit' opt.random.par: no visible global function definition for 'opt.par.tmp' opt.these.par: no visible global function definition for 'opt.par.tmp' opt.these.par: no visible binding for global variable 'm' plot.mat: no visible global function definition for 'par' plot.mat: no visible global function definition for 'grey' plot.mat: no visible global function definition for 'plot.default' plot.mat: no visible global function definition for 'rect' plot.mat: no visible global function definition for 'segments' plot.mat: no visible global function definition for 'text' plot.mat: no visible global function definition for 'title' plot.mat: no visible global function definition for 'mtext' plot.mat: no visible global function definition for 'gray' plot.mat.nm: no visible binding for global variable 'par' plot.mat.nm: no visible global function definition for 'par' plot.mat.nm: no visible global function definition for 'title' savematrix: no visible global function definition for 'write.table' savenetwork: no visible global function definition for 'as' savenetwork: no visible global function definition for 'write.table' sedist: no visible global function definition for 'as.dist' Undefined global functions or variables: Matrix as as.dist crit.fun.tmp gplot gray grey m median mtext na.omit opt.par.tmp optimize par plot.default read.table rect runif s segments text title useM write.table Consider adding importFrom("grDevices", "gray", "grey") importFrom("graphics", "mtext", "par", "plot.default", "rect", "segments", "text", "title") importFrom("methods", "as") importFrom("stats", "as.dist", "median", "na.omit", "optimize", "runif") importFrom("utils", "read.table", "write.table") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'plot.mat': 'plot.mat' 'plot.mat.nm' The \usage entries for S3 methods should use the \method markup and not their full name. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [14s] OK ** running examples for arch 'x64' ... [17s] OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs