* using log directory 'd:/Rcompile/CRANpkg/local/3.3/calibrator.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'calibrator/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'calibrator' version '1.2-6' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'calibrator' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE EK.eqn10.supp: no visible global function definition for 'integrate' MH: no visible global function definition for 'rmvnorm' MH: no visible global function definition for 'runif' computer.model: no visible global function definition for 'rmvnorm' create.new.toy.datasets: no visible global function definition for 'rnorm' model.inadequacy: no visible global function definition for 'rmvnorm' prob.psi1: no visible global function definition for 'dmvnorm' prob.psi2: no visible global function definition for 'dmvnorm' prob.theta: no visible global function definition for 'dmvnorm' sample.theta: no visible global function definition for 'rmvnorm' stage1: no visible global function definition for 'optim' stage2: no visible global function definition for 'optim' stage3: no visible global function definition for 'optim' Undefined global functions or variables: dmvnorm integrate optim rmvnorm rnorm runif Consider adding importFrom("stats", "integrate", "optim", "rnorm", "runif") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [6s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [13s] OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE