* using log directory 'd:/Rcompile/CRANpkg/local/3.3/circular.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'circular/DESCRIPTION' ... OK * this is package 'circular' version '0.4-7' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'circular' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... NOTE Call with DUP: .C("R_distance", x = as.double(x), nr = N, nc = ncol(x), d = double(N * (N - 1)/2), diag = as.integer(FALSE), method = as.integer(method), DUP = FALSE, NAOK = TRUE, PACKAGE = "circular") DUP is no longer supported and will be ignored. * checking R code for possible problems ... NOTE AovCircularRad: no visible global function definition for 'pf' AovCircularRad: no visible global function definition for 'pchisq' AxisCircularRad: no visible global function definition for 'lines.default' AxisCircularRad: no visible global function definition for 'text.default' AxisCircularRad: no visible global function definition for 'text' Calpha : I2n : temp: no visible global function definition for 'integrate' Calpha : I3n : temp: no visible global function definition for 'integrate' Calpha : lhs : temp: no visible global function definition for 'integrate' Calpha : temp: no visible global function definition for 'uniroot' Calphaapprox : temp: no visible global function definition for 'qchisq' Calphaapprox : temp: no visible global function definition for 'qf' CirclePlotRad: no visible global function definition for 'par' CirclePlotRad: no visible global function definition for 'plot.default' ClmLocationCircularRad: no visible global function definition for 'lm.wfit' ClmLocationCircularStartRad : beta.init: no visible global function definition for 'lm' ClmLocationCircularStartRad: no visible global function definition for 'optim' CorCircularRad: no visible global function definition for 'pnorm' DgenvonmisesRad: no visible global function definition for 'integrate' DjonespewseyRad: no visible global function definition for 'integrate' EqualKappaTestRad: no visible global function definition for 'pchisq' LinesCircularRad: no visible global function definition for 'lines.default' LmCircularccRad: no visible global function definition for 'lm' LmCircularccRad: no visible global function definition for 'pchisq' LmCircularclRad: no visible global function definition for 'lm' LmCircularclRad: no visible global function definition for 'pnorm' LsfitCircleRad: no visible global function definition for 'optim' MlewrappedcauchyRad: no visible global function definition for 'uniroot' PointsCircularRad: no visible global function definition for 'points.default' PointsCircularRad: no visible global function definition for 'hist.default' Ralpha : I2n : temp: no visible global function definition for 'integrate' Ralpha : I3n : temp: no visible global function definition for 'integrate' Ralpha : lhs : temp: no visible global function definition for 'integrate' Ralpha : temp: no visible global function definition for 'uniroot' Ralphaapprox : temp: no visible global function definition for 'qchisq' Ralphaapprox : temp: no visible global function definition for 'qf' RaoTestRad: no visible global function definition for 'pchisq' RayleighTestRad: no visible global function definition for 'pnorm' RayleighTestRad: no visible global function definition for 'dnorm' RosediagOSRad: no visible global function definition for 'hist.default' RosediagOSRad: no visible global function definition for 'lines.default' RosediagRad: no visible global function definition for 'hist.default' RosediagRad: no visible global function definition for 'polygon' RwrappedcauchyRad: no visible global function definition for 'rcauchy' RwrappednormalRad: no visible global function definition for 'rnorm' TicksCircularRad: no visible global function definition for 'lines.default' WallraffTestRad: no visible global function definition for 'kruskal.test' WatsonWheelerTestRad: no visible global function definition for 'pchisq' WatsonWilliamsTestRad: no visible global function definition for 'pf' allcrosses: no visible global function definition for 'approxfun' aov.circular: no visible global function definition for 'complete.cases' area: no visible global function definition for 'approxfun' area : int: no visible global function definition for 'integrate' arrows.circular: no visible global function definition for 'arrows' axis.circular: no visible global function definition for 'par' axis.circular: no visible global function definition for 'na.omit' bw.cv.ml.circular: no visible global function definition for 'optimize' bw.cv.mse.circular : mse.internal: no visible global function definition for 'integrate' bw.cv.mse.circular: no visible global function definition for 'optimize' bw.nrd.circular: no visible global function definition for 'uniroot' circle.control: no visible global function definition for 'par' circular.colors: no visible global function definition for 'hsv' clm: no visible global function definition for 'is.empty.model' clm: no visible global function definition for 'model.response' clm: no visible global function definition for 'model.matrix' clm: no visible global function definition for 'model.weights' clm: no visible global function definition for 'model.offset' clm: no visible global function definition for 'model.extract' clm: no visible global function definition for '.getXlevels' cor.circular: no visible global function definition for 'complete.cases' cross: no visible global function definition for 'approxfun' cross: no visible global function definition for 'uniroot' equal.kappa.test: no visible global function definition for 'complete.cases' formula.clm: no visible global function definition for 'formula' heatmap.circular: no visible binding for global variable 'hclust' heatmap.circular : : no visible global function definition for 'reorder' heatmap.circular: no visible global function definition for 'as.dendrogram' heatmap.circular: no visible global function definition for 'order.dendrogram' heatmap.circular: no visible global function definition for 'par' heatmap.circular: no visible global function definition for 'layout' heatmap.circular: no visible global function definition for 'image' heatmap.circular: no visible global function definition for 'mtext' heatmap.circular: no visible global function definition for 'plot' heatmap.circular: no visible global function definition for 'frame' heatmap.circular: no visible global function definition for 'title' kuiper.test: no visible global function definition for 'na.omit' lines.circular: no visible global function definition for 'complete.cases' lines.density.circular: no visible global function definition for 'lines.default' lines.density.circular: no visible global function definition for 'abline' lines.density.circular: no visible global function definition for 'points.default' lines.edf: no visible global function definition for 'lines.default' lines.modal.region.circular: no visible global function definition for 'par' lines.modal.region.circular: no visible global function definition for 'lines' lines.modal.region.circular: no visible global function definition for 'abline' lines.modal.region.circular: no visible global function definition for 'polygon' lm.circular.cc: no visible global function definition for 'complete.cases' lm.circular.cl: no visible global function definition for 'complete.cases' lsfit.circle: no visible global function definition for 'complete.cases' make.circular.link : linkfun: no visible global function definition for 'qnorm' make.circular.link : linkinv: no visible global function definition for 'qnorm' make.circular.link : linkinv: no visible global function definition for 'pnorm' make.circular.link : mu.eta: no visible global function definition for 'dnorm' medianHL.default: no visible global function definition for 'median.default' mle.cardioid: no visible global function definition for 'na.omit' mle.vonmises: no visible global function definition for 'na.omit' mle.vonmises.bootstrap.ci: no visible global function definition for 'na.omit' mle.wrappedcauchy: no visible global function definition for 'na.omit' mle.wrappednormal: no visible global function definition for 'na.omit' modal.region.circular: no visible global function definition for 'uniroot' plot.circular: no visible global function definition for 'na.omit' plot.density.circular: no visible global function definition for 'plot.default' plot.density.circular: no visible global function definition for 'abline' plot.density.circular: no visible global function definition for 'points' plot.edf: no visible global function definition for 'na.omit' plot.edf: no visible global function definition for 'plot.default' plot.lsfit.circle: no visible global function definition for 'par' plot.lsfit.circle: no visible global function definition for 'plot.default' plot.lsfit.circle: no visible global function definition for 'lines.default' plot.lsfit.circle: no visible global function definition for 'points.default' plot.lsfit.circle: no visible global function definition for 'text.default' plot.modal.region.circular: no visible global function definition for 'par' plot.modal.region.circular: no visible global function definition for 'plot' plot.modal.region.circular: no visible global function definition for 'abline' plot.modal.region.circular: no visible global function definition for 'polygon' plot.totalvariation.circular: no visible global function definition for 'par' plot.totalvariation.circular: no visible global function definition for 'plot' plot.totalvariation.circular: no visible global function definition for 'axTicks' plot.totalvariation.circular: no visible global function definition for 'polygon' plot.totalvariation.circular: no visible global function definition for 'abline' points.circular: no visible global function definition for 'na.omit' pp.plot: no visible global function definition for 'na.omit' pp.plot: no visible global function definition for 'plot.default' pp.plot: no visible global function definition for 'abline' print.clm: no visible global function definition for 'coef' print.clm: no visible global function definition for 'naprint' print.lm.circular.cl: no visible global function definition for 'printCoefmat' print.rao.spacing.test: no visible global function definition for 'data' print.rao.spacing.test: no visible binding for global variable 'rao.table' print.rao.test: no visible global function definition for 'qchisq' print.summary.clm: no visible global function definition for 'setNames' print.summary.clm: no visible global function definition for 'printCoefmat' print.summary.clm: no visible global function definition for 'naprint' print.summary.clm: no visible global function definition for 'symnum' pwrappednormal : intDwrappednormalRad: no visible global function definition for 'integrate' qvonmises : zeroPvonmisesRad: no visible global function definition for 'integrate' qvonmises: no visible global function definition for 'uniroot' qwrappednormal : zeroPwrappednormalRad: no visible global function definition for 'integrate' qwrappednormal: no visible global function definition for 'uniroot' rao.spacing.test: no visible global function definition for 'na.omit' rao.test: no visible binding for global variable 'na.omit' rayleigh.test: no visible global function definition for 'na.omit' rose.diag: no visible global function definition for 'na.omit' rose.diag.oldstyle: no visible global function definition for 'na.omit' rstable: no visible global function definition for 'rcauchy' rstable: no visible global function definition for 'rnorm' rstable: no visible global function definition for 'rexp' summary.clm: no visible global function definition for 'coef' summary.clm: no visible global function definition for 'pt' summary.clm: no visible global function definition for 'residuals' ticks.circular: no visible global function definition for 'par' totalvariation.circular: no visible global function definition for 'approxfun' totalvariation.circular: no visible global function definition for 'integrate' trigonometric.moment: no visible global function definition for 'na.omit' wallraff.test.default: no visible global function definition for 'complete.cases' wallraff.test.formula: no visible global function definition for 'model.frame' wallraff.test.formula: no visible global function definition for 'as.formula' watson.test: no visible global function definition for 'na.omit' watson.two.test: no visible global function definition for 'na.omit' watson.wheeler.test.default: no visible global function definition for 'complete.cases' watson.wheeler.test.formula: no visible global function definition for 'model.frame' watson.wheeler.test.formula: no visible global function definition for 'as.formula' watson.williams.test.default: no visible global function definition for 'complete.cases' watson.williams.test.formula: no visible global function definition for 'model.frame' watson.williams.test.formula: no visible global function definition for 'as.formula' weights.clm: no visible global function definition for 'naresid' windrose : circles: no visible global function definition for 'polygon' windrose : circles: no visible global function definition for 'lines' windrose: no visible global function definition for 'complete.cases' windrose: no visible global function definition for 'par' windrose: no visible global function definition for 'plot' windrose: no visible global function definition for 'hist.default' windrose: no visible global function definition for 'lines' windrose: no visible global function definition for 'polygon' windrose: no visible global function definition for 'text' Undefined global functions or variables: .getXlevels abline approxfun arrows as.dendrogram as.formula axTicks coef complete.cases data dnorm formula frame hclust hist.default hsv image integrate is.empty.model kruskal.test layout lines lines.default lm lm.wfit median.default model.extract model.frame model.matrix model.offset model.response model.weights mtext na.omit naprint naresid optim optimize order.dendrogram par pchisq pf plot plot.default pnorm points points.default polygon printCoefmat pt qchisq qf qnorm rao.table rcauchy reorder residuals rexp rnorm setNames symnum text text.default title uniroot Consider adding importFrom("grDevices", "hsv") importFrom("graphics", "abline", "arrows", "axTicks", "frame", "hist.default", "image", "layout", "lines", "lines.default", "mtext", "par", "plot", "plot.default", "points", "points.default", "polygon", "text", "text.default", "title") importFrom("stats", ".getXlevels", "approxfun", "as.dendrogram", "as.formula", "coef", "complete.cases", "dnorm", "formula", "hclust", "integrate", "is.empty.model", "kruskal.test", "lm", "lm.wfit", "median.default", "model.extract", "model.frame", "model.matrix", "model.offset", "model.response", "model.weights", "na.omit", "naprint", "naresid", "optim", "optimize", "order.dendrogram", "pchisq", "pf", "pnorm", "printCoefmat", "pt", "qchisq", "qf", "qnorm", "rcauchy", "reorder", "residuals", "rexp", "rnorm", "setNames", "symnum", "uniroot") importFrom("utils", "data") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [8s] OK ** running examples for arch 'x64' ... [10s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [1s] OK Running 'test-median.R' [0s] Running 'test-walraff.test.R' [0s] Comparing 'test-walraff.test.Rout' to 'test-walraff.test.Rout.save' ...26c26 < Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 --- > Kruskal-Wallis chi-squared = 10.7697, df = 1, p-value = 0.001032 34c34 < Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 --- > Kruskal-Wallis chi-squared = 0.9328, df = 1, p-value = 0.3341 41c41 < Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 --- > Kruskal-Wallis chi-squared = 0.9328, df = 1, p-value = 0.3341 51c51 < Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 --- > Kruskal-Wallis chi-squared = 0.9328, df = 1, p-value = 0.3341 58c58 < Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 --- > Kruskal-Wallis chi-squared = 10.7697, df = 1, p-value = 0.001032 68c68 < Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 --- > Kruskal-Wallis chi-squared = 10.7697, df = 1, p-value = 0.001032 77c77 < Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 --- > Kruskal-Wallis chi-squared = 10.7697, df = 1, p-value = 0.001032 Running 'test-watson.williams.test.R' [0s] Comparing 'test-watson.williams.test.Rout' to 'test-watson.williams.test.Rout.save' ... OK ** running tests for arch 'x64' ... [1s] OK Running 'test-median.R' [0s] Running 'test-walraff.test.R' [0s] Comparing 'test-walraff.test.Rout' to 'test-walraff.test.Rout.save' ...26c26 < Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 --- > Kruskal-Wallis chi-squared = 10.7697, df = 1, p-value = 0.001032 34c34 < Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 --- > Kruskal-Wallis chi-squared = 0.9328, df = 1, p-value = 0.3341 41c41 < Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 --- > Kruskal-Wallis chi-squared = 0.9328, df = 1, p-value = 0.3341 51c51 < Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 --- > Kruskal-Wallis chi-squared = 0.9328, df = 1, p-value = 0.3341 58c58 < Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 --- > Kruskal-Wallis chi-squared = 10.7697, df = 1, p-value = 0.001032 68c68 < Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 --- > Kruskal-Wallis chi-squared = 10.7697, df = 1, p-value = 0.001032 77c77 < Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 --- > Kruskal-Wallis chi-squared = 10.7697, df = 1, p-value = 0.001032 Running 'test-watson.williams.test.R' [0s] Comparing 'test-watson.williams.test.Rout' to 'test-watson.williams.test.Rout.save' ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs