* using log directory 'd:/Rcompile/CRANpkg/local/3.3/dlmap.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'dlmap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'dlmap' version '1.13'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'asreml'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'dlmap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
  'nlme' 'wgaim'
  Please remove these calls from your code.
'library' or 'require' call to 'asreml' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  'ibdreg' 'mgcv' 'nlme' 'qtl' 'wgaim'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported object imported by a ':::' call: 'qtl:::adjust.rf.ri'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Foreign function call to a different package:
  .C(cfunc, ..., PACKAGE = "qtl")
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
* checking R code for possible problems ... NOTE
calc.genoprob2: no visible binding for global variable 'mf.k'
calc.genoprob2: no visible binding for global variable 'mf.cf'
calc.genoprob2: no visible binding for global variable 'mf.m'
calc.genoprob2: no visible binding for global variable 'mf.h'
calc.genoprob2: no visible global function definition for 'nind'
calc.genoprob2: no visible global function definition for 'nchr'
calc.genoprob2: no visible global function definition for 'nmar'
calc.genoprob2: no visible global function definition for
  'getgenonames'
calcpos: no visible global function definition for 'nchr'
calcpos: no visible global function definition for 'nind'
calcpos: no visible global function definition for 'nmar'
calcpos: no visible global function definition for 'pull.map'
calcpos: no visible global function definition for 'calc.genoprob'
cintern : <anonymous>: no visible global function definition for
  'contr.helmert'
cintern: no visible global function definition for 'pchisq'
dlcross.cross: no visible global function definition for 'nind'
dlcross.cross: no visible global function definition for 'fill.geno'
dlcross.cross: no visible global function definition for 'pull.map'
dlcross.cross: no visible global function definition for 'est.map'
dlcross.cross: no visible global function definition for 'replace.map'
dlcross.dlmap: no visible global function definition for 'read.table'
dlcross.dlmap: no visible global function definition for 'fill.geno'
dlcross.dlmap: no visible global function definition for 'est.map'
dlcross.dlmap: no visible global function definition for 'replace.map'
dlcross.dlmap: no visible global function definition for 'pull.map'
dlcross.other: no visible global function definition for 'read.table'
dlmap: no visible global function definition for 'as.formula'
dlmap: no visible global function definition for 'asreml.Ainverse'
dlmap: no visible global function definition for 'Ginv'
dlmap : <anonymous>: no visible global function definition for 'pnorm'
dlmap: no visible binding for global variable 'na.omit'
dlmapdet: no visible global function definition for 'mroot'
dlmapdet: no visible global function definition for 'C'
dlmapdet: no visible global function definition for 'as.formula'
dlmapdet: no visible global function definition for 'groupedData'
dlmapdet: no visible global function definition for 'lme'
dlmapdet: no visible global function definition for 'lmeControl'
dlmapdet: no visible binding for global variable 'na.omit'
dlmapdet: no visible global function definition for 'anova'
dlmaploc: no visible global function definition for 'mroot'
dlmaploc: no visible global function definition for 'as.formula'
dlmaploc: no visible global function definition for 'groupedData'
dlmaploc: no visible global function definition for 'lme'
dlmaploc: no visible global function definition for 'lmeControl'
dlmaploc: no visible binding for global variable 'na.omit'
dlmaploc: no visible global function definition for 'anova'
dltest: no visible global function definition for 'as.formula'
dltest: no visible global function definition for 'mroot'
dltest: no visible global function definition for 'asreml'
dltest: no visible global function definition for 'update'
dltest: no visible global function definition for 'groupedData'
dltest: no visible global function definition for 'lme'
dltest: no visible global function definition for 'lmeControl'
dltest: no visible binding for global variable 'na.omit'
nmrk.dlcross: no visible global function definition for 'nmar'
plot.dlcross: no visible global function definition for 'par'
plot.dlcross: no visible global function definition for 'plot'
plot.dlcross: no visible global function definition for 'hist'
plot.dlmap: no visible global function definition for 'nchr'
plot.dlmap: no visible global function definition for 'link.map.cross'
plot.dlmap: no visible global function definition for 'pull.map'
plot.dlmap: no visible global function definition for 'find.markerpos'
plot.dlmap: no visible global function definition for 'polygon'
plot.dlmap: no visible global function definition for 'segments'
plot.dlmap: no visible global function definition for 'title'
profileplot.dlmap: no visible global function definition for 'par'
profileplot.dlmap: no visible global function definition for 'plot'
profileplot.dlmap: no visible global function definition for 'axis'
profileplot.dlmap: no visible global function definition for 'abline'
pvfx: no visible global function definition for 'pchibar'
qchibar: no visible global function definition for 'qchisq'
waldtest.asreml: no visible global function definition for 'update'
Undefined global functions or variables:
  C Ginv abline anova as.formula asreml asreml.Ainverse axis
  calc.genoprob contr.helmert est.map fill.geno find.markerpos
  getgenonames groupedData hist link.map.cross lme lmeControl mf.cf
  mf.h mf.k mf.m mroot na.omit nchr nind nmar par pchibar pchisq plot
  pnorm polygon pull.map qchisq read.table replace.map segments title
  update
Consider adding
  importFrom("graphics", "abline", "axis", "hist", "par", "plot",
             "polygon", "segments", "title")
  importFrom("stats", "C", "anova", "as.formula", "contr.helmert",
             "na.omit", "pchisq", "pnorm", "qchisq", "update")
  importFrom("utils", "read.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [2s] OK
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs