* using log directory 'd:/Rcompile/CRANpkg/local/3.3/dmt.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'dmt/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'dmt' version '0.8.20'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'dmt' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
calc.pcca: no visible global function definition for 'cov'
calc.pfa: no visible global function definition for 'cov'
compare.estimate.and.truth: no visible global function definition for
  'cor'
cost.W.exponential: no visible global function definition for 'dexp'
cost7: no visible global function definition for 'dexp'
drCCAcombine : reg_cca: no visible global function definition for 'cov'
drCCAcombine : eigtest: no visible global function definition for 'cov'
drCCAcombine : random: no visible binding for global variable 'var'
generate.toydata: no visible global function definition for 'rnorm'
generate.toydata: no visible global function definition for 'rexp'
initialize2: no visible global function definition for 'var'
initialize2: no visible global function definition for 'cov'
optimize.parameters: no visible global function definition for 'rnorm'
optimize.parameters: no visible global function definition for 'sd'
optimize.parameters: no visible global function definition for 'optim'
pfacost: no visible global function definition for 'cov'
plotVar: no visible global function definition for 'par'
plotVar: no visible global function definition for 'lines'
ppca.calculate: no visible global function definition for 'cov'
regCCA: no visible global function definition for 'cov'
sharedVar : pwisepca: no visible global function definition for
  'prcomp'
solve.archambeau: no visible global function definition for 'cov'
specificVar : withinpca: no visible global function definition for
  'prcomp'
specificVar : withinpca: no visible global function definition for
  'cov'
specificVar: no visible global function definition for 'cov'
update.W.singledata: no visible global function definition for 'optim'
wprior: no visible global function definition for 'dexp'
Undefined global functions or variables:
  cor cov dexp lines optim par prcomp rexp rnorm sd var
Consider adding
  importFrom("graphics", "lines", "par")
  importFrom("stats", "cor", "cov", "dexp", "optim", "prcomp", "rexp",
             "rnorm", "sd", "var")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [11s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE