* using log directory 'd:/Rcompile/CRANpkg/local/3.3/enrichvs.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'enrichvs/DESCRIPTION' ... OK * this is package 'enrichvs' version '0.0.5' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'enrichvs' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Checking should be performed on sources prepared by 'R CMD build'. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE matplot_enrichment_curve: no visible global function definition for 'plot' matplot_enrichment_curve: no visible global function definition for 'lines' matplot_enrichment_curve: no visible global function definition for 'legend' plot_enrichment_curve: no visible global function definition for 'plot' plot_enrichment_curve: no visible global function definition for 'lines' plot_enrichment_curve: no visible global function definition for 'plot.xy' plot_enrichment_curve: no visible global function definition for 'xy.coords' plot_enrichment_curve: no visible global function definition for 'rainbow' plot_enrichment_curve: no visible global function definition for 'axTicks' plot_enrichment_curve: no visible global function definition for 'rect' plot_enrichment_curve: no visible global function definition for 'axis' plot_enrichment_curve_xlog: no visible global function definition for 'plot' plot_enrichment_curve_xlog: no visible global function definition for 'lines' plot_enrichment_curve_xlog: no visible global function definition for 'plot.xy' plot_enrichment_curve_xlog: no visible global function definition for 'xy.coords' plot_enrichment_curve_xlog: no visible global function definition for 'rainbow' plot_enrichment_curve_xlog: no visible global function definition for 'axTicks' plot_enrichment_curve_xlog: no visible global function definition for 'rect' plot_enrichment_curve_xlog: no visible global function definition for 'axis' Undefined global functions or variables: axTicks axis legend lines plot plot.xy rainbow rect xy.coords Consider adding importFrom("grDevices", "rainbow", "xy.coords") importFrom("graphics", "axTicks", "axis", "legend", "lines", "plot", "plot.xy", "rect") to your NAMESPACE file. * checking Rd files ... NOTE prepare_Rd: auac.Rd:28-30: Dropping empty section \details prepare_Rd: auac.Rd:40-42: Dropping empty section \note prepare_Rd: auac.Rd:44-46: Dropping empty section \seealso prepare_Rd: auc.Rd:28-30: Dropping empty section \details prepare_Rd: auc.Rd:40-42: Dropping empty section \note prepare_Rd: auc.Rd:44-46: Dropping empty section \seealso prepare_Rd: bedroc.Rd:28-30: Dropping empty section \details prepare_Rd: bedroc.Rd:40-42: Dropping empty section \note prepare_Rd: bedroc.Rd:44-46: Dropping empty section \seealso prepare_Rd: enrichment_factor.Rd:28-30: Dropping empty section \details prepare_Rd: enrichment_factor.Rd:40-42: Dropping empty section \note prepare_Rd: enrichment_factor.Rd:34-36: Dropping empty section \references prepare_Rd: enrichment_factor.Rd:44-46: Dropping empty section \seealso prepare_Rd: enrichvs-package.Rd:34-36: Dropping empty section \seealso prepare_Rd: enrichvs-package.Rd:37-39: Dropping empty section \examples prepare_Rd: matplot_enrichment_curve.Rd:22-24: Dropping empty section \details prepare_Rd: matplot_enrichment_curve.Rd:34-36: Dropping empty section \note prepare_Rd: matplot_enrichment_curve.Rd:28-30: Dropping empty section \references prepare_Rd: matplot_enrichment_curve.Rd:38-40: Dropping empty section \seealso prepare_Rd: plot_enrichment_curve.Rd:44-46: Dropping empty section \details prepare_Rd: plot_enrichment_curve.Rd:56-58: Dropping empty section \note prepare_Rd: plot_enrichment_curve.Rd:50-52: Dropping empty section \references prepare_Rd: plot_enrichment_curve.Rd:60-62: Dropping empty section \seealso prepare_Rd: plot_enrichment_curve_xlog.Rd:44-46: Dropping empty section \details prepare_Rd: plot_enrichment_curve_xlog.Rd:56-58: Dropping empty section \note prepare_Rd: plot_enrichment_curve_xlog.Rd:50-52: Dropping empty section \references prepare_Rd: plot_enrichment_curve_xlog.Rd:60-62: Dropping empty section \seealso prepare_Rd: rie.Rd:28-30: Dropping empty section \details prepare_Rd: rie.Rd:49-51: Dropping empty section \seealso * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [2s] OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs