* using log directory 'd:/Rcompile/CRANpkg/local/3.3/epade.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'epade/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'epade' version '0.3.8' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'epade' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'plotrix' which was already attached by Depends. Please remove these calls from your code. 'library' or 'require' calls in package code: 'Hmisc' 'survival' Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. Package in Depends field not imported from: 'plotrix' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: 'a.alpha.ade' 'a.coladd.ade' 'a.getcol.ade' 'a.glc' * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE KM.plot.ade: no visible global function definition for 'par' KM.plot.ade: no visible global function definition for 'rgb' KM.plot.ade : a.line.ade: no visible global function definition for 'points' KM.plot.ade : a.line.ade: no visible global function definition for 'rect' KM.plot.ade : plot.box.ade: no visible global function definition for 'plot' KM.plot.ade : plot.box.ade: no visible global function definition for 'rgb' KM.plot.ade : plot.box.ade: no visible global function definition for 'axis' KM.plot.ade : plot.box.ade: no visible global function definition for 'title' KM.plot.ade : plot.box.ade: no visible global function definition for 'box' KM.plot.ade : plot.box.ade: no visible global function definition for 'axis.break' KM.plot.ade : legens.ade: no visible global function definition for 'legend' KM.plot.ade : legens.ade: no visible global function definition for 'rgb' KM.plot.ade : legens.ade: no visible global function definition for 'strwidth' KM.plot.ade : plot.box.ade: no visible global function definition for 'polygon' KM.plot.ade : plot.box.ade: no visible global function definition for 'par' KM.plot.ade : plot.box.ade: no visible global function definition for 'abline' KM.plot.ade : plot.box.ade: no visible global function definition for 'segments' KM.plot.ade : plot.box.ade: no visible global function definition for 'text' KM.plot.ade: no visible global function definition for 'survfit' KM.plot.ade: no visible binding for global variable 'na.exclude' KM.plot.ade: no visible global function definition for 'survdiff' KM.plot.ade: no visible global function definition for 'pchisq' a.alpha.ade: no visible global function definition for 'rgb' a.coladd.ade: no visible global function definition for 'col2rgb' a.coladd.ade: no visible global function definition for 'rgb' a.form.ade: no visible global function definition for 'rect' a.form.ade: no visible global function definition for 'cylindrect' a.form.ade: no visible global function definition for 'par' a.form.ade: no visible global function definition for 'polygon' a.form.ade : sub.ellipse.ade : ellipse: no visible global function definition for 'lines' a.form.ade : sub.ellipse.ade : ellipse: no visible global function definition for 'polygon' a.form.ade : sub.ellipse.ade : cylinder.ade: no visible global function definition for 'col2rgb' a.form.ade : sub.ellipse.ade : gradient.rect.ade: no visible global function definition for 'par' a.form.ade : sub.ellipse.ade : gradient.rect.ade: no visible global function definition for 'color.gradient' a.form.ade : sub.ellipse.ade : gradient.rect.ade: no visible global function definition for 'rect' a.form.ade : sub.ellipse.ade: no visible global function definition for 'segments' a.form.ade : sub.ellipse.ade: no visible global function definition for 'rect' a.getcol.ade: no visible global function definition for 'rainbow' a.getcol.ade: no visible global function definition for 'terrain.colors' a.glc: no visible global function definition for 'par' a.glc: no visible global function definition for 'yinch' a.glc: no visible global function definition for 'xinch' a.jt.trend.ade: no visible global function definition for 'pnorm' a.pcor.mat: no visible global function definition for 'na.omit' a.pcor.mat: no visible global function definition for 'cov' a.pcor.mat: no visible global function definition for 'cov2cor' a.pcor.rec: no visible global function definition for 'na.omit' a.pcor.rec: no visible global function definition for 'cor' a.pcor.test: no visible global function definition for 'na.omit' a.pcor.test: no visible global function definition for 'pnorm' bar.plot.ade: no visible global function definition for 'par' bar.plot.ade: no visible global function definition for 'rgb' bar.plot.ade: no visible global function definition for 'plot' bar.plot.ade: no visible global function definition for 'axis' bar.plot.ade: no visible global function definition for 'abline' bar.plot.ade: no visible global function definition for 'text' bar.plot.ade: no visible global function definition for 'legend' bar.plot.ade: no visible global function definition for 'strwidth' bar.plot.ade: no visible global function definition for 'box' bar.plot.ade: no visible global function definition for 'polygon' bar.plot.ade: no visible global function definition for 'chisq.test' bar.plot.ade: no visible global function definition for 'segments' bar.plot.wtd: no visible global function definition for 'par' bar.plot.wtd: no visible global function definition for 'rgb' bar.plot.wtd: no visible global function definition for 'plot' bar.plot.wtd: no visible global function definition for 'axis' bar.plot.wtd: no visible global function definition for 'abline' bar.plot.wtd: no visible global function definition for 'text' bar.plot.wtd: no visible global function definition for 'legend' bar.plot.wtd: no visible global function definition for 'strwidth' bar.plot.wtd: no visible global function definition for 'box' bar.plot.wtd: no visible global function definition for 'polygon' bar.plot.wtd: no visible global function definition for 'chisq.test' bar.plot.wtd: no visible global function definition for 'segments' bar3d.ade: no visible global function definition for 'par' bar3d.ade : a.bar3d.ade: no visible global function definition for 'par' bar3d.ade : a.bar3d.ade: no visible global function definition for 'polygon' bar3d.ade: no visible global function definition for 'rgb' bar3d.ade: no visible global function definition for 'plot' bar3d.ade: no visible global function definition for 'polygon' bar3d.ade: no visible global function definition for 'axis' bar3d.ade: no visible global function definition for 'segments' bar3d.ade: no visible global function definition for 'text' bland.altman.ade: no visible global function definition for 'par' bland.altman.ade: no visible global function definition for 'rgb' bland.altman.ade: no visible global function definition for 'sd' bland.altman.ade: no visible global function definition for 'text' box.plot.ade: no visible global function definition for 'par' box.plot.ade: no visible global function definition for 'rgb' box.plot.ade: no visible global function definition for 't.test' box.plot.ade: no visible global function definition for 'wilcox.test' box.plot.ade: no visible global function definition for 'plot' box.plot.ade: no visible global function definition for 'boxplot' box.plot.ade : a.draw.box: no visible global function definition for 'cylindrect' box.plot.ade : a.draw.box: no visible global function definition for 'rect' box.plot.ade : a.draw.box: no visible global function definition for 'points' box.plot.ade : a.draw.box: no visible global function definition for 'segments' box.plot.ade : a.draw.box: no visible binding for global variable 'sd' box.plot.ade : a.draw.box: no visible binding for global variable 'median' box.plot.ade : a.draw.box: no visible binding for global variable 'density' box.plot.ade : a.draw.box: no visible global function definition for 'polygon' box.plot.ade : a.draw.box: no visible global function definition for 'arrows' box.plot.ade : a.draw.box: no visible global function definition for 'lines' box.plot.ade : a.draw.box: no visible global function definition for 'quantile' box.plot.ade : a.draw.box: no visible binding for global variable 'quantile' box.plot.ade: no visible global function definition for 'axis' box.plot.ade: no visible global function definition for 'abline' box.plot.ade: no visible global function definition for 'text' box.plot.ade: no visible global function definition for 'segments' box.plot.ade: no visible global function definition for 'rect' box.plot.ade: no visible global function definition for 'polygon' box.plot.ade: no visible global function definition for 'box' box.plot.ade: no visible global function definition for 'grid' box.plot.wtd: no visible global function definition for 'par' box.plot.wtd : wtd.sd: no visible global function definition for 'wtd.var' box.plot.wtd: no visible global function definition for 'rgb' box.plot.wtd: no visible global function definition for 'plot' box.plot.wtd: no visible global function definition for 'boxplot' box.plot.wtd : a.draw.box: no visible global function definition for 'wtd.mean' box.plot.wtd : a.draw.box: no visible global function definition for 'wtd.quantile' box.plot.wtd : a.draw.box: no visible global function definition for 'points' box.plot.wtd : a.draw.box: no visible global function definition for 'cylindrect' box.plot.wtd : a.draw.box: no visible global function definition for 'rect' box.plot.wtd : a.draw.box: no visible global function definition for 'segments' box.plot.wtd : a.draw.box: no visible global function definition for 'arrows' box.plot.wtd : a.draw.box: no visible global function definition for 'lines' box.plot.wtd: no visible global function definition for 'axis' box.plot.wtd: no visible global function definition for 'abline' box.plot.wtd: no visible global function definition for 'text' box.plot.wtd: no visible global function definition for 'segments' box.plot.wtd: no visible global function definition for 'rect' box.plot.wtd: no visible global function definition for 'polygon' box.plot.wtd: no visible global function definition for 'box' box.plot.wtd: no visible global function definition for 'grid' correlogram.ade: no visible global function definition for 'par' correlogram.ade: no visible global function definition for 'rgb' correlogram.ade: no visible global function definition for 'cor.test' correlogram.ade: no visible global function definition for 'plot' correlogram.ade: no visible global function definition for 'axis' correlogram.ade: no visible global function definition for 'text' correlogram.ade: no visible global function definition for 'symbols' correlogram.ade: no visible global function definition for 'abline' correlogram.ade: no visible global function definition for 'box' correlogram.ade: no visible global function definition for 'polygon' curves.ade: no visible global function definition for 'par' curves.ade: no visible global function definition for 'rgb' curves.ade: no visible global function definition for 'lines' histogram.ade: no visible global function definition for 'par' histogram.ade : a.wtd.var: no visible global function definition for 'var' histogram.ade: no visible global function definition for 'rgb' histogram.ade: no visible global function definition for 'weighted.hist' histogram.ade: no visible global function definition for 'plot' histogram.ade: no visible global function definition for 'rect' histogram.ade: no visible global function definition for 'abline' histogram.ade: no visible global function definition for 'axis' histogram.ade: no visible global function definition for 'dnorm' histogram.ade: no visible global function definition for 'lines' histogram.ade: no visible global function definition for 'polygon' histogram.ade: no visible global function definition for 'box' histogram.ade: no visible global function definition for 'legend' histogram.ade: no visible global function definition for 'strwidth' histogram.ade: no visible global function definition for 'text' missiogram.ade: no visible global function definition for 'par' missiogram.ade: no visible global function definition for 'rgb' missiogram.ade: no visible global function definition for 'plot' missiogram.ade: no visible global function definition for 'axis' missiogram.ade: no visible global function definition for 'mtext' missiogram.ade: no visible global function definition for 'box' missiogram.ade: no visible global function definition for 'symbols' missiogram.ade: no visible global function definition for 'abline' missiogram.ade: no visible global function definition for 'polygon' missiogram.ade: no visible global function definition for 'text' parallel.ade: no visible global function definition for 'par' parallel.ade: no visible global function definition for 'rgb' parallel.ade : runlines: no visible global function definition for 'rainbow' parallel.ade : runlines: no visible global function definition for 'segments' parallel.ade : runlines: no visible global function definition for 'abline' parallel.ade: no visible global function definition for 'plot' parallel.ade: no visible global function definition for 'axis' parallel.ade: no visible global function definition for 'legend' parallel.ade: no visible global function definition for 'box' parallel.ade: no visible global function definition for 'polygon' parallel.ade: no visible global function definition for 'abline' parallel.ade: no visible global function definition for 'text' parallel.ade: no visible global function definition for 'strwidth' parallel.set.ade: no visible global function definition for 'par' parallel.set.ade: no visible global function definition for 'rgb' parallel.set.ade : runpoly: no visible global function definition for 'polygon' parallel.set.ade : runpoly: no visible global function definition for 'rect' parallel.set.ade : runpoly: no visible global function definition for 'par' parallel.set.ade : runpoly: no visible global function definition for 'rgb' parallel.set.ade : runpoly: no visible global function definition for 'text' parallel.set.ade: no visible global function definition for 'plot' parallel.set.ade: no visible global function definition for 'axis' parallel.set.ade: no visible global function definition for 'box' parallel.set.ade: no visible global function definition for 'polygon' parallel.set.ade: no visible global function definition for 'abline' parallel.set.ade: no visible global function definition for 'text' performance.plot.ade: no visible global function definition for 'par' performance.plot.ade: no visible global function definition for 'rgb' performance.plot.ade: no visible global function definition for 'plot' performance.plot.ade: no visible global function definition for 'axis' performance.plot.ade: no visible global function definition for 'polygon' performance.plot.ade: no visible global function definition for 'legend' performance.plot.ade: no visible global function definition for 'segments' performance.plot.ade: no visible global function definition for 'text' performance.plot.ade: no visible global function definition for 'points' performance.plot.ade: no visible global function definition for 'box' performance.plot.ade: no visible global function definition for 'abline' performance.plot.ade: no visible global function definition for 'rect' qq.ade: no visible global function definition for 'par' qq.ade: no visible global function definition for 'rgb' qq.ade: no visible global function definition for 'qnorm' qq.ade: no visible global function definition for 'ppoints' qq.ade: no visible global function definition for 'sd' qq.ade: no visible global function definition for 'rnorm' qq.ade: no visible global function definition for 'points' qq.ade: no visible global function definition for 'quantile' qq.ade: no visible global function definition for 'abline' ratio.plot.ade: no visible global function definition for 'par' ratio.plot.ade: no visible global function definition for 'rgb' ratio.plot.ade: no visible global function definition for 'plot' ratio.plot.ade: no visible global function definition for 'abline' ratio.plot.ade: no visible global function definition for 'segments' ratio.plot.ade: no visible global function definition for 'legend' ratio.plot.ade: no visible global function definition for 'points' ratio.plot.ade: no visible global function definition for 'text' ratio.plot.ade: no visible global function definition for 'axis' ratio.plot.ade: no visible global function definition for 'mtext' ratio.plot.ade: no visible global function definition for 'box' ratio.plot.ade: no visible global function definition for 'polygon' ratio.plot.ade: no visible global function definition for 'arrows' ratio.plot.ade: no visible global function definition for 'strwidth' roc.plot.ade: no visible global function definition for 'par' roc.plot.ade : a.roc.test.ade : trapezarea: no visible global function definition for 'approx' roc.plot.ade : a.roc.test.ade: no visible global function definition for 'pchisq' roc.plot.ade: no visible global function definition for 'contr.sum' roc.plot.ade: no visible global function definition for 'rgb' roc.plot.ade : a.roc.calcs: no visible global function definition for 'model.frame' roc.plot.ade : a.roc.calcs: no visible global function definition for 'xtabs' roc.plot.ade : plot.box.ade: no visible global function definition for 'plot' roc.plot.ade : plot.box.ade: no visible global function definition for 'rgb' roc.plot.ade : plot.box.ade: no visible global function definition for 'axis' roc.plot.ade : plot.box.ade: no visible global function definition for 'abline' roc.plot.ade : plot.box.ade: no visible global function definition for 'box' roc.plot.ade : legens.ade: no visible global function definition for 'legend' roc.plot.ade : legens.ade: no visible global function definition for 'strwidth' roc.plot.ade : plot.box.ade: no visible global function definition for 'polygon' roc.plot.ade : plot.box.ade: no visible global function definition for 'par' roc.plot.ade : legens.ade: no visible global function definition for 'rgb' roc.plot.ade : plot.box.ade: no visible global function definition for 'text' roc.plot.ade: no visible global function definition for 'glm' roc.plot.ade: no visible global function definition for 'points' scatter.ade: no visible global function definition for 'par' scatter.ade: no visible global function definition for 'quantile' scatter.ade: no visible global function definition for 'rgb' scatter.ade : plot.ade: no visible global function definition for 'col2rgb' scatter.ade : plot.ade: no visible global function definition for 'points' scatter.ade : plot.ade: no visible global function definition for 'rgb' scatter.ade : plot.ade: no visible global function definition for 'abline' scatter.ade : plot.ade: no visible global function definition for 'lm' scatter.ade : plot.ade: no visible global function definition for 'loess' scatter.ade : plot.ade: no visible global function definition for 'lines' scatter.ade : plot.ade: no visible global function definition for 'predict' scatter.ade : plot.ade: no visible binding for global variable 'na.exclude' scatter.ade : plot.box.ade: no visible global function definition for 'plot' scatter.ade : plot.box.ade: no visible global function definition for 'axis' scatter.ade : plot.box.ade: no visible global function definition for 'rgb' scatter.ade : plot.box.ade: no visible global function definition for 'abline' scatter.ade : plot.box.ade: no visible global function definition for 'box' scatter.ade : plot.box.ade: no visible global function definition for 'title' scatter.ade : legens.ade: no visible global function definition for 'legend' scatter.ade : legens.ade: no visible global function definition for 'rgb' scatter.ade : legens.ade: no visible global function definition for 'strwidth' scatter.ade : plot.box.ade: no visible global function definition for 'polygon' scatter.ade : plot.box.ade: no visible global function definition for 'par' scatter.ade : plot.box.ade: no visible global function definition for 'text' scatter.ade : legens.ade: no visible global function definition for 'par' scatter.ade : legens.ade: no visible global function definition for 'box' tornado.ade: no visible global function definition for 'par' tornado.ade: no visible global function definition for 'rgb' tornado.ade: no visible global function definition for 'hist' tornado.ade: no visible global function definition for 'plot' tornado.ade: no visible global function definition for 'strwidth' tornado.ade: no visible global function definition for 'rect' tornado.ade: no visible global function definition for 'text' tornado.ade: no visible global function definition for 'segments' tornado.ade: no visible global function definition for 'axis' tornado.ade: no visible global function definition for 'legend' tornado.ade: no visible global function definition for 'abline' tornado.ade: no visible global function definition for 'box' tornado.ade: no visible global function definition for 'polygon' wall.ade: no visible global function definition for 'par' wall.ade: no visible global function definition for 'rgb' wall.ade : plot.box.ade: no visible global function definition for 'plot' wall.ade : plot.box.ade: no visible global function definition for 'axis' wall.ade : plot.box.ade: no visible global function definition for 'rgb' wall.ade : plot.box.ade: no visible global function definition for 'abline' wall.ade : plot.box.ade: no visible global function definition for 'box' wall.ade : plot.box.ade: no visible global function definition for 'title' wall.ade : legens.ade: no visible global function definition for 'legend' wall.ade : legens.ade: no visible global function definition for 'rgb' wall.ade : legens.ade: no visible global function definition for 'strwidth' wall.ade : plot.box.ade: no visible global function definition for 'polygon' wall.ade : plot.box.ade: no visible global function definition for 'par' wall.ade : plot.box.ade: no visible global function definition for 'text' wall.ade : legens.ade: no visible global function definition for 'par' wall.ade : legens.ade: no visible global function definition for 'box' Undefined global functions or variables: abline approx arrows axis axis.break box boxplot chisq.test col2rgb color.gradient contr.sum cor cor.test cov cov2cor cylindrect density dnorm glm grid hist legend lines lm loess median model.frame mtext na.exclude na.omit par pchisq plot pnorm points polygon ppoints predict qnorm quantile rainbow rect rgb rnorm sd segments strwidth survdiff survfit symbols t.test terrain.colors text title var weighted.hist wilcox.test wtd.mean wtd.quantile wtd.var xinch xtabs yinch Consider adding importFrom("grDevices", "col2rgb", "rainbow", "rgb", "terrain.colors") importFrom("graphics", "abline", "arrows", "axis", "box", "boxplot", "grid", "hist", "legend", "lines", "mtext", "par", "plot", "points", "polygon", "rect", "segments", "strwidth", "symbols", "text", "title", "xinch", "yinch") importFrom("stats", "approx", "chisq.test", "contr.sum", "cor", "cor.test", "cov", "cov2cor", "density", "dnorm", "glm", "lm", "loess", "median", "model.frame", "na.exclude", "na.omit", "pchisq", "pnorm", "ppoints", "predict", "qnorm", "quantile", "rnorm", "sd", "t.test", "var", "wilcox.test", "xtabs") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [6s] OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs