* using log directory 'd:/Rcompile/CRANpkg/local/3.3/fbati.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'fbati/DESCRIPTION' ... OK * this is package 'fbati' version '1.0-1.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'fbati' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE condGene: no visible global function definition for 'getFromNamespace' condGene: no visible global function definition for 'pchisq' condGeneFBATControl_estEq: no visible global function definition for 'getFromNamespace' condGeneFBATControl_estEq: no visible global function definition for 'pchisq' condGeneFBATControl_estEqNuis: no visible global function definition for 'getFromNamespace' condGeneP: no visible global function definition for 'getFromNamespace' condGeneP: no visible global function definition for 'pchisq' condGeneP2: no visible global function definition for 'getFromNamespace' condGeneP2: no visible global function definition for 'pchisq' condGeneP4: no visible global function definition for 'getFromNamespace' condGeneP4: no visible global function definition for 'pchisq' condGeneR: no visible global function definition for 'getFromNamespace' condGeneR: no visible global function definition for 'pchisq' cpp_gesim_set: no visible global function definition for 'qnorm' cpp_gped_statCompute: no visible global function definition for 'pchisq' cpp_gped_statCompute_A: no visible global function definition for 'pchisq' datamatrix.R.debug: no visible global function definition for 'write.csv' fbat.install: no visible global function definition for 'download.file' fbatcStrategyStepLatex: no visible global function definition for 'str' fbatj: no visible global function definition for 'pchisq' fbatme: no visible global function definition for 'pchisq' fbatmeev: no visible global function definition for 'pchisq' ibat.R.debug: no visible global function definition for 'rnorm' mmlroot: no visible global function definition for 'runif' mroot: no visible global function definition for 'optim' mroptim: no visible global function definition for 'optim' mroptim: no visible global function definition for 'runif' mrroot: no visible global function definition for 'runif' mrroot2: no visible global function definition for 'runif' mrroot3: no visible global function definition for 'rnorm' programControl: no visible global function definition for 'getFromNamespace' sh.install: no visible global function definition for 'download.file' updateFbatcGUI: no visible global function definition for 'getFromNamespace' updateFbatcSSFunc: no visible global function definition for 'getFromNamespace' updateFbatgeAllGUI: no visible global function definition for 'getFromNamespace' updateFbatgeGUI: no visible global function definition for 'getFromNamespace' updateFbatiGUI: no visible global function definition for 'getFromNamespace' updateFbatjGUI: no visible global function definition for 'getFromNamespace' writeFbatcGUI: no visible global function definition for 'getFromNamespace' writeFbatcGUI: no visible global function definition for 'write.csv' writeFbatgeAllGUI: no visible global function definition for 'getFromNamespace' writeFbatgeAllGUI: no visible global function definition for 'write.csv' writeFbatgeGUI: no visible global function definition for 'getFromNamespace' writeFbatgeGUI: no visible global function definition for 'write.csv' writeFbatiGUI: no visible global function definition for 'getFromNamespace' writeFbatiGUI: no visible global function definition for 'write.csv' writeFbatjGUI: no visible global function definition for 'getFromNamespace' writeFbatjGUI: no visible global function definition for 'write.csv' Undefined global functions or variables: download.file getFromNamespace optim pchisq qnorm rnorm runif str write.csv Consider adding importFrom("stats", "optim", "pchisq", "qnorm", "rnorm", "runif") importFrom("utils", "download.file", "getFromNamespace", "str", "write.csv") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [4s] OK ** running examples for arch 'x64' ... [4s] OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE