* using log directory 'd:/Rcompile/CRANpkg/local/3.3/glmmML.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'glmmML/DESCRIPTION' ... OK
* this is package 'glmmML' version '1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'glmmML' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Calls with DUP:
   .C("glmm_ml", as.integer(fam), as.integer(p), as.double(start.coef), 
       as.integer(cluster), as.double(weights), as.double(cluster.weights), 
       as.double(start.sigma), as.integer(fix.sigma), as.double(X), 
       as.double(Y), as.double(offset), as.integer(fam.size), as.integer(n.fam), 
       as.integer(method), as.integer(n.points), as.double(control$epsilon), 
       as.integer(control$maxit), as.integer(control$trace), as.integer(boot), 
       as.integer(prior), as.double(predicted), beta = double(p), 
       sigma = double(1), loglik = double(1), variance = double((p + 
           1) * (p + 1)), post.mode = double(n.fam), post.mean = double(n.fam), 
       mu = double(nobs), bootP = double(1), bootLog = double(boot), 
       convergence = integer(1), info = integer(1), DUP = FALSE, 
       PACKAGE = "glmmML")
   .C("glmm_boot", as.integer(fam), as.integer(p), as.double(start.coef), 
       as.integer(cluster), as.double(weights), as.double(t(X)), 
       as.double(Y), as.double(offset), as.integer(famSize), as.integer(nFam), 
       as.double(control$epsilon), as.integer(control$maxit), as.integer(control$trace), 
       as.integer(boot), beta = double(p), predicted = as.double(predicted), 
       fitted = double(length(Y)), loglik = double(1), variance = double(p * 
           p), info = integer(1), frail = double(nFam), bootP = double(1), 
       bootLog = double(boot), convergence = integer(1), DUP = FALSE, 
       PACKAGE = "glmmML")
   .C("glmm_boot0", as.integer(fam), as.integer(cluster), as.double(weights), 
       as.double(Y), as.double(offset), as.integer(famSize), as.integer(nFam), 
       as.integer(control$trace), as.integer(boot), predicted = as.double(predicted), 
       fitted = double(length(Y)), loglik = double(1), frail = double(nFam), 
       bootP = double(1), bootLog = double(boot), convergence = integer(1), 
       DUP = FALSE, PACKAGE = "glmmML")
DUP is no longer supported and will be ignored.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [9s] OK
** running examples for arch 'x64' ... [9s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE