* using log directory 'd:/Rcompile/CRANpkg/local/3.3/gmum.r.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'gmum.r/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'gmum.r' version '0.2.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'gmum.r' can be installed ... ERROR Installation failed. See 'd:/Rcompile/CRANpkg/local/3.3/gmum.r.Rcheck/00install.out' for details. * DONE The installation logfile: * installing *source* package 'gmum.r' ... ** package 'gmum.r' successfully unpacked and MD5 sums checked ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/temp/RtmpaKh9iD/R.INSTALL3cc70897ea/gmum.r/src-i386' d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c svm/libsvm_runner.cpp -o svm/libsvm_runner.o In file included from svm/libsvm_runner.cpp:18:0: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/svm/svm.h:6:0, from ../inst/include/svm/libsvm_runner.h:14, from svm/libsvm_runner.cpp:14: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ svm/libsvm_runner.cpp: In member function 'svm_node** LibSVMRunner::ArmaSpMatToSvmNode(arma::sp_mat&)': svm/libsvm_runner.cpp:350:14: warning: variable 'row' set but not used [-Wunused-but-set-variable] long int row; ^ svm/libsvm_runner.cpp: In member function 'void LibSVMRunner::libraryParseCommandLine(SVMConfiguration&, svm_parameter&, int, char**, char*, char*)': svm/libsvm_runner.cpp:397:9: warning: unused variable 'print_func' [-Wunused-variable] void (*print_func)(const char*) = NULL; // default printing to stdout ^ In file included from svm/libsvm_runner.cpp:18:0: ../inst/include/utils/utils.h: At global scope: ../inst/include/utils/utils.h:107:12: warning: 'int __seed(int)' defined but not used [-Wunused-function] static int __seed(int seed) { ^ ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ ../inst/include/utils/utils.h:131:15: warning: 'double __double_rnd(double, double)' defined but not used [-Wunused-function] static double __double_rnd(double min, double max) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c svm/svm.cpp -o svm/svm.o In file included from svm/svm.cpp:15:0: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/svm/svm.h:6:0, from svm/svm.cpp:11: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ svm/svm.cpp: In function 'int svm_save_model(const char*, const svm_model*, Logger&)': svm/svm.cpp:2706:24: warning: unused variable 'sv_coef' [-Wunused-variable] const double * const *sv_coef = model->sv_coef; ^ In file included from svm/svm.cpp:15:0: ../inst/include/utils/utils.h: At global scope: ../inst/include/utils/utils.h:107:12: warning: 'int __seed(int)' defined but not used [-Wunused-function] static int __seed(int seed) { ^ ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ ../inst/include/utils/utils.h:131:15: warning: 'double __double_rnd(double, double)' defined but not used [-Wunused-function] static double __double_rnd(double min, double max) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c svm/svm_basic.cpp -o svm/svm_basic.o In file included from svm/svm_basic.cpp:3:0: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/svm/svm_basic.h:11:0, from svm/svm_basic.cpp:1: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ In file included from svm/svm_basic.cpp:1:0: ../inst/include/svm/svm_basic.h: In constructor 'SVMConfiguration::SVMConfiguration()': ../inst/include/svm/svm_basic.h:66:10: warning: 'SVMConfiguration::nSV' will be initialized after [-Wreorder] int *nSV; /* number of SVs for each class (nSV[k]) */ ^ ../inst/include/svm/svm_basic.h:53:13: warning: 'double* SVMConfiguration::libsvm_class_weights' [-Wreorder] double* libsvm_class_weights; // for C_SVC ^ svm/svm_basic.cpp:7:1: warning: when initialized here [-Wreorder] SVMConfiguration::SVMConfiguration(): label(0), nSV(0), libsvm_class_weights(0) { ^ In file included from svm/svm_basic.cpp:3:0: ../inst/include/utils/utils.h: At global scope: ../inst/include/utils/utils.h:107:12: warning: 'int __seed(int)' defined but not used [-Wunused-function] static int __seed(int seed) { ^ ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ ../inst/include/utils/utils.h:131:15: warning: 'double __double_rnd(double, double)' defined but not used [-Wunused-function] static double __double_rnd(double min, double max) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c svm/svm_client.cpp -o svm/svm_client.o svm/svm_client.cpp: In member function 'void SVMClient::setW(arma::vec)': svm/svm_client.cpp:77:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i != new_w.n_elem; ++i) { ^ svm/svm_client.cpp: In member function 'void SVMClient::predictFromConfig()': svm/svm_client.cpp:268:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i < n_docs; ++i) { ^ svm/svm_client.cpp:284:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int j=0; j < config.getSVCount(); ++j) { ^ svm/svm_client.cpp:302:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i < n_docs; ++i) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c svm/svm_utils.cpp -o svm/svm_utils.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c svm/svm_wrapper_module.cpp -o svm/svm_wrapper_module.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c svm/svmlight_runner.cpp -o svm/svmlight_runner.o In file included from svm/svmlight_runner.cpp:20:0: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/svm/svm_basic.h:11:0, from ../inst/include/svm/svm_handler.h:4, from ../inst/include/svm/svmlight_runner.h:13, from svm/svmlight_runner.cpp:16: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ svm/svmlight_runner.cpp: In member function 'void SVMLightRunner::resultsToLabels(SVMConfiguration&)': svm/svmlight_runner.cpp:132:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i < n_docs; ++i) { ^ svm/svmlight_runner.cpp: In member function 'MODEL* SVMLightRunner::libraryReadModel(char*, bool, SVMConfiguration&)': svm/svmlight_runner.cpp:819:16: warning: variable 'model_kernel_parm_custom' set but not used [-Wunused-but-set-variable] char * model_kernel_parm_custom = model->kernel_parm.custom; ^ svm/svmlight_runner.cpp: In member function 'void SVMLightRunner::libraryReadDocuments(char*, DOC***, double**, long int*, long int*, bool, SVMConfiguration&)': svm/svmlight_runner.cpp:953:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (dnum < config.target.n_rows) { ^ svm/svmlight_runner.cpp:1004:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (dnum < config.target.n_rows) { ^ svm/svmlight_runner.cpp: In member function 'std::string SVMLightRunner::SVMConfigurationToSVMLightLearnInputLine(SVMConfiguration&, long int)': svm/svmlight_runner.cpp:1081:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(current_row != config.getSparseData().n_rows-1){ ^ svm/svmlight_runner.cpp:1087:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (long int i = 1; i <= config.data.n_cols; ++i) { ^ svm/svmlight_runner.cpp: In member function 'char* SVMLightRunner::SVMConfigurationToSVMLightModelSVLine(SVMConfiguration&, long int)': svm/svmlight_runner.cpp:1112:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (long int i = 1; i <= config.support_vectors.n_rows; ++i) { ^ svm/svmlight_runner.cpp: In member function 'MODEL* SVMLightRunner::libraryReadModel(char*, bool, SVMConfiguration&)': svm/svmlight_runner.cpp:851:58: warning: 'line' may be used uninitialized in this function [-Wmaybe-uninitialized] &costfactor,&wpos,max_words,&comment)) { ^ svm/svmlight_runner.cpp:861:24: warning: 'modelfl' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(modelfl); ^ svm/svmlight_runner.cpp: In member function 'void SVMLightRunner::libraryReadDocuments(char*, DOC***, double**, long int*, long int*, bool, SVMConfiguration&)': svm/svmlight_runner.cpp:1001:63: warning: 'docfl' may be used uninitialized in this function [-Wmaybe-uninitialized] newline = (!feof(docfl)) && fgets(line,(int)ll,docfl); ^ svm/svmlight_runner.cpp:1017:19: warning: 'line' may be used uninitialized in this function [-Wmaybe-uninitialized] free(line); ^ svm/svmlight_runner.cpp: In member function 'int SVMLightRunner::librarySVMClassifyMain(int, char**, bool, SVMConfiguration&)': svm/svmlight_runner.cpp:645:33: warning: 'docfl' may be used uninitialized in this function [-Wmaybe-uninitialized] newline = (!feof(docfl)) && fgets(line,(int)lld,docfl); ^ svm/svmlight_runner.cpp:661:23: warning: 'predfl' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(predfl); ^ svm/svmlight_runner.cpp:663:19: warning: 'line' may be used uninitialized in this function [-Wmaybe-uninitialized] free(line); ^ In file included from svm/svmlight_runner.cpp:20:0: ../inst/include/utils/utils.h: At global scope: ../inst/include/utils/utils.h:107:12: warning: 'int __seed(int)' defined but not used [-Wunused-function] static int __seed(int seed) { ^ ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ ../inst/include/utils/utils.h:131:15: warning: 'double __double_rnd(double, double)' defined but not used [-Wunused-function] static double __double_rnd(double min, double max) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c svm/two_e_svm_post.cpp -o svm/two_e_svm_post.o svm/two_e_svm_post.cpp: In member function 'virtual void TwoeSVMPostprocessor::processRequest(SVMConfiguration&)': svm/two_e_svm_post.cpp:28:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i != w.n_elem; ++i) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c svm/two_e_svm_pre.cpp -o svm/two_e_svm_pre.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c svm/validator_runner.cpp -o svm/validator_runner.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c cec/assignment.cpp -o cec/assignment.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c cec/cec.cpp -o cec/cec.o In file included from ../inst/include/cec/hartigan.hpp:11:0, from cec/cec.cpp:2: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/cec/hartigan.hpp:10:0, from cec/cec.cpp:2: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ cec/cec.cpp:10:0: warning: "M_E" redefined #define M_E 2.71828182845904523536 ^ In file included from d:/RCompile/CRANpkg/lib/3.3/Rcpp/include/RcppCommon.h:72:0, from d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include/RcppArmadilloForward.h:26, from d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include/RcppArmadillo.h:31, from ../inst/include/cec/cluster.hpp:7, from ../inst/include/cec/algorithm.hpp:5, from ../inst/include/cec/cec.hpp:9, from cec/cec.cpp:1: D:/RCompile/recent/R-3.3.2/include/Rmath.h:106:0: note: this is the location of the previous definition #define M_E 2.718281828459045235360287471353 /* e */ ^ cec/cec.cpp:11:0: warning: "M_PI" redefined #define M_PI 3.14159265358979323846 ^ In file included from D:/RCompile/recent/R-3.3.2/include/R.h:74:0, from d:/RCompile/CRANpkg/lib/3.3/Rcpp/include/Rcpp/r/headers.h:52, from d:/RCompile/CRANpkg/lib/3.3/Rcpp/include/RcppCommon.h:29, from d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include/RcppArmadilloForward.h:26, from d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include/RcppArmadillo.h:31, from ../inst/include/cec/cluster.hpp:7, from ../inst/include/cec/algorithm.hpp:5, from ../inst/include/cec/cec.hpp:9, from cec/cec.cpp:1: D:/RCompile/recent/R-3.3.2/include/R_ext/Constants.h:28:0: note: this is the location of the previous definition #define M_PI 3.141592653589793238462643383279502884197169399375 ^ In file included from ../inst/include/cec/hartigan.hpp:11:0, from cec/cec.cpp:2: ../inst/include/utils/utils.h:107:12: warning: 'int __seed(int)' defined but not used [-Wunused-function] static int __seed(int seed) { ^ ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ ../inst/include/utils/utils.h:131:15: warning: 'double __double_rnd(double, double)' defined but not used [-Wunused-function] static double __double_rnd(double min, double max) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c cec/cec_configuration.cpp -o cec/cec_configuration.o In file included from ../inst/include/cec/hartigan.hpp:11:0, from cec/cec_configuration.cpp:8: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/cec/hartigan.hpp:10:0, from cec/cec_configuration.cpp:8: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ In file included from ../inst/include/cec/hartigan.hpp:11:0, from cec/cec_configuration.cpp:8: ../inst/include/utils/utils.h:107:12: warning: 'int __seed(int)' defined but not used [-Wunused-function] static int __seed(int seed) { ^ ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ ../inst/include/utils/utils.h:131:15: warning: 'double __double_rnd(double, double)' defined but not used [-Wunused-function] static double __double_rnd(double min, double max) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c cec/cec_module.cpp -o cec/cec_module.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c cec/centroids_assignment.cpp -o cec/centroids_assignment.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c cec/cluster.cpp -o cec/cluster.o cec/cluster.cpp:5:0: warning: "M_E" redefined #define M_E 2.71828182845904523536 ^ In file included from d:/RCompile/CRANpkg/lib/3.3/Rcpp/include/RcppCommon.h:72:0, from d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include/RcppArmadilloForward.h:26, from d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include/RcppArmadillo.h:31, from ../inst/include/cec/cluster.hpp:7, from cec/cluster.cpp:1: D:/RCompile/recent/R-3.3.2/include/Rmath.h:106:0: note: this is the location of the previous definition #define M_E 2.718281828459045235360287471353 /* e */ ^ cec/cluster.cpp:6:0: warning: "M_PI" redefined #define M_PI 3.14159265358979323846 ^ In file included from D:/RCompile/recent/R-3.3.2/include/R.h:74:0, from d:/RCompile/CRANpkg/lib/3.3/Rcpp/include/Rcpp/r/headers.h:52, from d:/RCompile/CRANpkg/lib/3.3/Rcpp/include/RcppCommon.h:29, from d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include/RcppArmadilloForward.h:26, from d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include/RcppArmadillo.h:31, from ../inst/include/cec/cluster.hpp:7, from cec/cluster.cpp:1: D:/RCompile/recent/R-3.3.2/include/R_ext/Constants.h:28:0: note: this is the location of the previous definition #define M_PI 3.141592653589793238462643383279502884197169399375 ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c cec/cluster_custom_function.cpp -o cec/cluster_custom_function.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c cec/hartigan.cpp -o cec/hartigan.o In file included from ../inst/include/cec/hartigan.hpp:11:0, from cec/hartigan.cpp:3: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/cec/hartigan.hpp:10:0, from cec/hartigan.cpp:3: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ In file included from ../inst/include/cec/hartigan.hpp:11:0, from cec/hartigan.cpp:3: ../inst/include/utils/utils.h:107:12: warning: 'int __seed(int)' defined but not used [-Wunused-function] static int __seed(int seed) { ^ ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ ../inst/include/utils/utils.h:131:15: warning: 'double __double_rnd(double, double)' defined but not used [-Wunused-function] static double __double_rnd(double min, double max) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c cec/kmeanspp_assignment.cpp -o cec/kmeanspp_assignment.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c cec/random_assignment.cpp -o cec/random_assignment.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c utils/threading.cpp -o utils/threading.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c utils/tinythread.cpp -o utils/tinythread.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c utils/utils.cpp -o utils/utils.o In file included from utils/utils.cpp:4:0: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/utils/utils.h:20:0, from utils/utils.cpp:4: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ In file included from utils/utils.cpp:4:0: ../inst/include/utils/utils.h:107:12: warning: 'int __seed(int)' defined but not used [-Wunused-function] static int __seed(int seed) { ^ ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ ../inst/include/utils/utils.h:131:15: warning: 'double __double_rnd(double, double)' defined but not used [-Wunused-function] static double __double_rnd(double min, double max) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c gng/gng_algorithm.cpp -o gng/gng_algorithm.o In file included from ../inst/include/gng/gng_configuration.h:17:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/utils/utils.h:20:0, from ../inst/include/gng/gng_configuration.h:17, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ In file included from ../inst/include/gng/gng_graph.h:163:0, from ../inst/include/gng/gng_configuration.h:18, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: ../inst/include/gng/gng_graph.hpp: In function 'void gmum::writeToGraphML(gmum::GNGGraph&, std::ostream&)': ../inst/include/gng/gng_graph.hpp:471:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i <= g.get_maximum_index(); ++i) { ^ In file included from ../inst/include/gng/gng_algorithm.h:14:0, from gng/gng_algorithm.cpp:13: ../inst/include/gng/gng_lazy_error_heap.h: In constructor 'gmum::GNGLazyErrorHeap::GNGLazyErrorHeap()': ../inst/include/gng/gng_lazy_error_heap.h:52:6: warning: 'gmum::GNGLazyErrorHeap::m_buffer_size' will be initialized after [-Wreorder] int m_buffer_size; ^ ../inst/include/gng/gng_lazy_error_heap.h:67:28: warning: base 'gmum::Heap' [-Wreorder] m_buffer_size(0), super() { ^ ../inst/include/gng/gng_lazy_error_heap.h:66:2: warning: when initialized here [-Wreorder] GNGLazyErrorHeap() : ^ In file included from gng/gng_algorithm.cpp:13:0: ../inst/include/gng/gng_algorithm.h: In constructor 'gmum::GNGAlgorithm::GNGAlgorithm(gmum::GNGGraph*, gmum::GNGDataset*, double*, double*, double, int, int, double, double, double, double, double, int, bool, bool, unsigned int, double, int, int, boost::shared_ptr)': ../inst/include/gng/gng_algorithm.h:123:15: warning: 'gmum::GNGAlgorithm::g_db' will be initialized after [-Wreorder] GNGDataset * g_db; ^ ../inst/include/gng/gng_algorithm.h:120:9: warning: 'int gmum::GNGAlgorithm::c' [-Wreorder] int s, c; ^ gng/gng_algorithm.cpp:79:1: warning: when initialized here [-Wreorder] GNGAlgorithm::GNGAlgorithm(GNGGraph * g, GNGDataset* db, ^ In file included from gng/gng_algorithm.cpp:13:0: ../inst/include/gng/gng_algorithm.h:120:9: warning: 'gmum::GNGAlgorithm::c' will be initialized after [-Wreorder] int s, c; ^ ../inst/include/gng/gng_algorithm.h:120:6: warning: 'int gmum::GNGAlgorithm::s' [-Wreorder] int s, c; ^ gng/gng_algorithm.cpp:79:1: warning: when initialized here [-Wreorder] GNGAlgorithm::GNGAlgorithm(GNGGraph * g, GNGDataset* db, ^ In file included from gng/gng_algorithm.cpp:13:0: ../inst/include/gng/gng_algorithm.h:120:6: warning: 'gmum::GNGAlgorithm::s' will be initialized after [-Wreorder] int s, c; ^ ../inst/include/gng/gng_algorithm.h:97:17: warning: 'int gmum::GNGAlgorithm::m_max_nodes' [-Wreorder] int m_max_age, m_max_nodes, m_iteration; ^ gng/gng_algorithm.cpp:79:1: warning: when initialized here [-Wreorder] GNGAlgorithm::GNGAlgorithm(GNGGraph * g, GNGDataset* db, ^ In file included from gng/gng_algorithm.cpp:13:0: ../inst/include/gng/gng_algorithm.h:97:17: warning: 'gmum::GNGAlgorithm::m_max_nodes' will be initialized after [-Wreorder] int m_max_age, m_max_nodes, m_iteration; ^ ../inst/include/gng/gng_algorithm.h:97:6: warning: 'int gmum::GNGAlgorithm::m_max_age' [-Wreorder] int m_max_age, m_max_nodes, m_iteration; ^ gng/gng_algorithm.cpp:79:1: warning: when initialized here [-Wreorder] GNGAlgorithm::GNGAlgorithm(GNGGraph * g, GNGDataset* db, ^ In file included from gng/gng_algorithm.cpp:13:0: ../inst/include/gng/gng_algorithm.h:106:18: warning: 'gmum::GNGAlgorithm::m_betha' will be initialized after [-Wreorder] double m_alpha, m_betha; ^ ../inst/include/gng/gng_algorithm.h:95:6: warning: 'int gmum::GNGAlgorithm::m_lambda' [-Wreorder] int m_lambda; //lambda parameter ^ gng/gng_algorithm.cpp:79:1: warning: when initialized here [-Wreorder] GNGAlgorithm::GNGAlgorithm(GNGGraph * g, GNGDataset* db, ^ In file included from gng/gng_algorithm.cpp:13:0: ../inst/include/gng/gng_algorithm.h:125:19: warning: 'gmum::GNGAlgorithm::errorHeap' will be initialized after [-Wreorder] GNGLazyErrorHeap errorHeap; ^ ../inst/include/gng/gng_algorithm.h:113:6: warning: 'int gmum::GNGAlgorithm::dim' [-Wreorder] int dim; ^ gng/gng_algorithm.cpp:79:1: warning: when initialized here [-Wreorder] GNGAlgorithm::GNGAlgorithm(GNGGraph * g, GNGDataset* db, ^ In file included from gng/gng_algorithm.cpp:13:0: ../inst/include/gng/gng_algorithm.h:113:6: warning: 'gmum::GNGAlgorithm::dim' will be initialized after [-Wreorder] int dim; ^ ../inst/include/gng/gng_algorithm.h:99:7: warning: 'bool gmum::GNGAlgorithm::m_toggle_uniformgrid' [-Wreorder] bool m_toggle_uniformgrid, m_toggle_lazyheap; ^ gng/gng_algorithm.cpp:79:1: warning: when initialized here [-Wreorder] GNGAlgorithm::GNGAlgorithm(GNGGraph * g, GNGDataset* db, ^ In file included from gng/gng_algorithm.cpp:13:0: ../inst/include/gng/gng_algorithm.h:104:6: warning: 'gmum::GNGAlgorithm::m_utility_option' will be initialized after [-Wreorder] int m_utility_option; ^ ../inst/include/gng/gng_algorithm.h:94:41: warning: 'circular_buffer > gmum::GNGAlgorithm::m_mean_error' [-Wreorder] circular_buffer > m_mean_error; //error of the network ^ gng/gng_algorithm.cpp:79:1: warning: when initialized here [-Wreorder] GNGAlgorithm::GNGAlgorithm(GNGGraph * g, GNGDataset* db, ^ In file included from gng/gng_algorithm.cpp:13:0: ../inst/include/gng/gng_algorithm.h:103:9: warning: 'gmum::GNGAlgorithm::m_utility_k' will be initialized after [-Wreorder] double m_utility_k; ^ ../inst/include/gng/gng_algorithm.h:101:9: warning: 'int gmum::GNGAlgorithm::max_iter' [-Wreorder] int max_iter; ^ gng/gng_algorithm.cpp:79:1: warning: when initialized here [-Wreorder] GNGAlgorithm::GNGAlgorithm(GNGGraph * g, GNGDataset* db, ^ In file included from gng/gng_algorithm.cpp:13:0: ../inst/include/gng/gng_algorithm.h:114:28: warning: 'gmum::GNGAlgorithm::m_logger' will be initialized after [-Wreorder] boost::shared_ptr m_logger; ^ ../inst/include/gng/gng_algorithm.h:97:30: warning: 'int gmum::GNGAlgorithm::m_iteration' [-Wreorder] int m_max_age, m_max_nodes, m_iteration; ^ gng/gng_algorithm.cpp:79:1: warning: when initialized here [-Wreorder] GNGAlgorithm::GNGAlgorithm(GNGGraph * g, GNGDataset* db, ^ In file included from ../inst/include/gng/gng_configuration.h:17:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ gng/gng_algorithm.cpp:113:3: note: in expansion of macro 'REP' REP(i, maximum_index + 1) ^ ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ gng/gng_algorithm.cpp:121:3: note: in expansion of macro 'REP' REP(i, maximum_index + 1) ^ ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ gng/gng_algorithm.cpp:129:2: note: in expansion of macro 'REP' REP(i, m_betha_powers_size) ^ ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ gng/gng_algorithm.cpp:135:2: note: in expansion of macro 'REP' REP(i, m_max_nodes * 2) ^ gng/gng_algorithm.cpp: In member function 'void gmum::GNGAlgorithm::addNewNode()': gng/gng_algorithm.cpp:196:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (m_max_nodes <= m_g.get_number_nodes()) { ^ gng/gng_algorithm.cpp: In member function 'int gmum::GNGAlgorithm::predict(const std::vector&)': gng/gng_algorithm.cpp:292:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (ex.size() != g_db->getGNGDim()) ^ gng/gng_algorithm.cpp: In member function 'std::pair gmum::GNGAlgorithm::adapt(const double*, const double*)': gng/gng_algorithm.cpp:374:7: warning: unused variable 'BYPASS' [-Wunused-variable] bool BYPASS = false; ^ In file included from ../inst/include/gng/gng_configuration.h:17:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: gng/gng_algorithm.cpp: In member function 'double gmum::GNGAlgorithm::calculateAccumulatedError()': ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ gng/gng_algorithm.cpp:456:3: note: in expansion of macro 'REP' REP(i, maximum_index + 1) ^ ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ gng/gng_algorithm.cpp:465:3: note: in expansion of macro 'REP' REP(i, maximum_index + 1) ^ gng/gng_algorithm.cpp: In member function 'void gmum::GNGAlgorithm::resizeUniformGrid()': ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ gng/gng_algorithm.cpp:490:2: note: in expansion of macro 'REP' REP(i, maximum_index + 1) ^ gng/gng_algorithm.cpp: In member function 'void gmum::GNGAlgorithm::updateClustering()': gng/gng_algorithm.cpp:544:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned int i=0;isize();++i){ ^ gng/gng_algorithm.cpp: In member function 'void gmum::GNGAlgorithm::runAlgorithm()': gng/gng_algorithm.cpp:636:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((time_elapsed_last_error > 0.1 && accumulated_error_count > 5 * m_g.get_number_nodes()) || ^ gng/gng_algorithm.cpp:637:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] accumulated_error_count > 15 * m_g.get_number_nodes()) { ^ gng/gng_algorithm.cpp:580:35: warning: variable 'accumulated_error_count_last' set but not used [-Wunused-but-set-variable] int accumulated_error_count = 0, accumulated_error_count_last = 0; ^ gng/gng_algorithm.cpp: In member function 'std::pair gmum::GNGAlgorithm::_getNearestNeurons(const double*)': gng/gng_algorithm.cpp:817:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = start_index + 1; i <= m_g.get_maximum_index(); ++i) { ^ gng/gng_algorithm.cpp:835:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = start_index + 1; i <= m_g.get_maximum_index(); ++i) { //another idea for storing list of actual nodes? ^ In file included from ../inst/include/gng/gng_configuration.h:17:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: gng/gng_algorithm.cpp: In member function 'void gmum::GNGAlgorithm::resetUniformGrid(double*, double*, double)': ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ gng/gng_algorithm.cpp:859:2: note: in expansion of macro 'REP' REP(i, maximum_index + 1) ^ gng/gng_algorithm.cpp: In member function 'bool gmum::GNGAlgorithm::stoppingCriterion()': gng/gng_algorithm.cpp:867:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] return m_g.get_number_nodes() > m_max_nodes; ^ In file included from ../inst/include/gng/gng_configuration.h:17:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: gng/gng_algorithm.cpp: In member function 'void gmum::GNGAlgorithm::fixErrorNew(GNGNode*)': ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ gng/gng_algorithm.cpp:887:3: note: in expansion of macro 'REP' REP(i, m_betha_powers_to_n_length) ^ gng/gng_algorithm.cpp: In member function 'double gmum::GNGAlgorithm::getMaximumError() const': ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ gng/gng_algorithm.cpp:919:2: note: in expansion of macro 'REP' REP(i,maximum_index+1) ^ gng/gng_algorithm.cpp: In member function 'void gmum::GNGAlgorithm::decreaseAllErrors()': ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ gng/gng_algorithm.cpp:947:2: note: in expansion of macro 'REP' REP(i,maximum_index+1) ^ In file included from ../inst/include/gng/gng_algorithm.h:15:0, from gng/gng_algorithm.cpp:13: ../inst/include/gng/uniform_grid.hpp: In instantiation of 'gmum::UniformGrid::UniformGrid(double*, double*, double, int, double, double, double, boost::shared_ptr) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]': gng/gng_algorithm.cpp:105:13: required from here ../inst/include/gng/uniform_grid.h:124:6: warning: 'gmum::UniformGrid >, std::list, int>::gng_dim' will be initialized after [-Wreorder] int gng_dim; ^ ../inst/include/gng/uniform_grid.h:118:9: warning: 'double gmum::UniformGrid >, std::list, int>::m_density_threshold' [-Wreorder] double m_density_threshold; ^ In file included from ../inst/include/gng/uniform_grid.h:173:0, from ../inst/include/gng/gng_algorithm.h:15, from gng/gng_algorithm.cpp:13: ../inst/include/gng/uniform_grid.hpp:346:1: warning: when initialized here [-Wreorder] UniformGrid::UniformGrid(double * origin, double *axis, double l, int gng_dim, ^ ../inst/include/gng/uniform_grid.hpp: In instantiation of 'bool gmum::UniformGrid::check_grow() [with VectorContainer = std::vector >; ListContainer = std::list; T = int]': gng/gng_algorithm.cpp:654:47: required from here ../inst/include/gng/uniform_grid.hpp:391:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (result == -1) ^ In file included from ../inst/include/gng/gng_configuration.h:17:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: ../inst/include/gng/uniform_grid.hpp: In instantiation of 'std::vector gmum::UniformGrid::findNearest(const double*, int) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]': gng/gng_algorithm.cpp:793:58: required from here ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ ../inst/include/gng/uniform_grid.hpp:204:2: note: in expansion of macro 'REP' REP(i, n) ^ In file included from ../inst/include/gng/uniform_grid.h:173:0, from ../inst/include/gng/gng_algorithm.h:15, from gng/gng_algorithm.cpp:13: ../inst/include/gng/uniform_grid.hpp:215:6: warning: unused variable 'size' [-Wunused-variable] int size = SIZE(m_grid); ^ In file included from ../inst/include/gng/gng_configuration.h:17:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: ../inst/include/gng/uniform_grid.hpp: In instantiation of 'void gmum::UniformGrid::purge(double*, double*, double) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]': gng/gng_algorithm.cpp:856:25: required from here ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ ../inst/include/gng/uniform_grid.hpp:30:3: note: in expansion of macro 'REP' REP(i, this->gng_dim) ^ ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ ../inst/include/gng/uniform_grid.hpp:35:2: note: in expansion of macro 'REP' REP(i, this->gng_dim) ^ In file included from ../inst/include/gng/gng_algorithm.h:15:0, from gng/gng_algorithm.cpp:13: ../inst/include/gng/uniform_grid.h: In instantiation of 'bool gmum::UniformGrid::_inside(int) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]': ../inst/include/gng/uniform_grid.hpp:187:16: required from 'int gmum::UniformGrid::insert(double*, T) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]' gng/gng_algorithm.cpp:115:42: required from here ../inst/include/gng/uniform_grid.h:161:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] return (x) >= 0 && (x) < m_grid.size(); ^ In file included from ../inst/include/gng/gng_configuration.h:17:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: ../inst/include/gng/uniform_grid.hpp: In instantiation of 'long int gmum::UniformGrid::calculate_new_size(double*, double*, double) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]': ../inst/include/gng/uniform_grid.hpp:389:23: required from 'bool gmum::UniformGrid::check_grow() [with VectorContainer = std::vector >; ListContainer = std::list; T = int]' gng/gng_algorithm.cpp:654:47: required from here ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ ../inst/include/gng/uniform_grid.hpp:376:2: note: in expansion of macro 'REP' REP(i, this->gng_dim) ^ ../inst/include/gng/uniform_grid.hpp: In instantiation of 'bool gmum::UniformGrid::searchSuccessful(double) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]': ../inst/include/gng/uniform_grid.hpp:261:41: required from 'std::vector gmum::UniformGrid::findNearest(const double*, int) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]' gng/gng_algorithm.cpp:793:58: required from here ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ ../inst/include/gng/uniform_grid.hpp:337:3: note: in expansion of macro 'REP' REP(i, s_search_query) ^ ../inst/include/gng/uniform_grid.hpp: In instantiation of 'bool gmum::UniformGrid::scanCorners() [with VectorContainer = std::vector >; ListContainer = std::list; T = int]': ../inst/include/gng/uniform_grid.hpp:266:20: required from 'std::vector gmum::UniformGrid::findNearest(const double*, int) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]' gng/gng_algorithm.cpp:793:58: required from here ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ ../inst/include/gng/uniform_grid.hpp:157:2: note: in expansion of macro 'REP' REP(i, this->gng_dim) ^ ../inst/include/gng/uniform_grid.hpp: In instantiation of 'void gmum::UniformGrid::purge(double*, int*, double) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]': ../inst/include/gng/uniform_grid.hpp:40:22: required from 'void gmum::UniformGrid::purge(double*, double*, double) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]' gng/gng_algorithm.cpp:856:25: required from here ../inst/include/utils/utils.h:29:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define REP(x, n) for(size_t x=0; x<(n); ++x) ^ ../inst/include/gng/uniform_grid.hpp:59:2: note: in expansion of macro 'REP' REP(i, this->gng_dim) ^ In file included from ../inst/include/gng/uniform_grid.h:173:0, from ../inst/include/gng/gng_algorithm.h:15, from gng/gng_algorithm.cpp:13: ../inst/include/gng/uniform_grid.hpp: In member function 'std::vector gmum::UniformGrid::findNearest(const double*, int) [with VectorContainer = std::vector >; ListContainer = std::list; T = int]': ../inst/include/gng/uniform_grid.hpp:245:2: warning: 'border' may be used uninitialized in this function [-Wmaybe-uninitialized] border_squared = border * border; ^ In file included from ../inst/include/gng/gng_configuration.h:17:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: ../inst/include/utils/utils.h: At global scope: ../inst/include/utils/utils.h:107:12: warning: 'int __seed(int)' defined but not used [-Wunused-function] static int __seed(int seed) { ^ ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ In file included from ../inst/include/gng/gng_graph.h:163:0, from ../inst/include/gng/gng_configuration.h:18, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from gng/gng_algorithm.cpp:13: ../inst/include/gng/gng_graph.hpp:511:20: warning: 'std::string gmum::writeToGraphML(gmum::GNGGraph&, std::string)' defined but not used [-Wunused-function] static std::string writeToGraphML(GNGGraph &g, string filename) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c gng/gng_configuration.cpp -o gng/gng_configuration.o In file included from ../inst/include/gng/gng_configuration.h:17:0, from gng/gng_configuration.cpp:1: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/utils/utils.h:20:0, from ../inst/include/gng/gng_configuration.h:17, from gng/gng_configuration.cpp:1: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ In file included from ../inst/include/gng/gng_graph.h:163:0, from ../inst/include/gng/gng_configuration.h:18, from gng/gng_configuration.cpp:1: ../inst/include/gng/gng_graph.hpp: In function 'void gmum::writeToGraphML(gmum::GNGGraph&, std::ostream&)': ../inst/include/gng/gng_graph.hpp:471:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i <= g.get_maximum_index(); ++i) { ^ In file included from ../inst/include/gng/gng_configuration.h:17:0, from gng/gng_configuration.cpp:1: ../inst/include/utils/utils.h: At global scope: ../inst/include/utils/utils.h:107:12: warning: 'int __seed(int)' defined but not used [-Wunused-function] static int __seed(int seed) { ^ ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ ../inst/include/utils/utils.h:131:15: warning: 'double __double_rnd(double, double)' defined but not used [-Wunused-function] static double __double_rnd(double min, double max) { ^ In file included from ../inst/include/gng/gng_graph.h:163:0, from ../inst/include/gng/gng_configuration.h:18, from gng/gng_configuration.cpp:1: ../inst/include/gng/gng_graph.hpp:511:20: warning: 'std::string gmum::writeToGraphML(gmum::GNGGraph&, std::string)' defined but not used [-Wunused-function] static std::string writeToGraphML(GNGGraph &g, string filename) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c gng/gng_module.cpp -o gng/gng_module.o In file included from ../inst/include/gng/gng_configuration.h:17:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng.h:11, from gng/gng_module.cpp:18: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/utils/utils.h:20:0, from ../inst/include/gng/gng_configuration.h:17, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng.h:11, from gng/gng_module.cpp:18: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ In file included from ../inst/include/gng/gng_graph.h:163:0, from ../inst/include/gng/gng_configuration.h:18, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng.h:11, from gng/gng_module.cpp:18: ../inst/include/gng/gng_graph.hpp: In function 'void gmum::writeToGraphML(gmum::GNGGraph&, std::ostream&)': ../inst/include/gng/gng_graph.hpp:471:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i <= g.get_maximum_index(); ++i) { ^ In file included from ../inst/include/gng/gng_algorithm.h:14:0, from ../inst/include/gng/gng.h:11, from gng/gng_module.cpp:18: ../inst/include/gng/gng_lazy_error_heap.h: In constructor 'gmum::GNGLazyErrorHeap::GNGLazyErrorHeap()': ../inst/include/gng/gng_lazy_error_heap.h:52:6: warning: 'gmum::GNGLazyErrorHeap::m_buffer_size' will be initialized after [-Wreorder] int m_buffer_size; ^ ../inst/include/gng/gng_lazy_error_heap.h:67:28: warning: base 'gmum::Heap' [-Wreorder] m_buffer_size(0), super() { ^ ../inst/include/gng/gng_lazy_error_heap.h:66:2: warning: when initialized here [-Wreorder] GNGLazyErrorHeap() : ^ In file included from ../inst/include/gng/gng_configuration.h:17:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng.h:11, from gng/gng_module.cpp:18: ../inst/include/utils/utils.h: At global scope: ../inst/include/utils/utils.h:107:12: warning: 'int __seed(int)' defined but not used [-Wunused-function] static int __seed(int seed) { ^ ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ In file included from ../inst/include/gng/gng.h:17:0, from gng/gng_module.cpp:18: ../inst/include/gng/gng_server.h:32:12: warning: 'gng_server_count' defined but not used [-Wunused-variable] static int gng_server_count=0; ^ In file included from ../inst/include/gng/gng_graph.h:163:0, from ../inst/include/gng/gng_configuration.h:18, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng.h:11, from gng/gng_module.cpp:18: ../inst/include/gng/gng_graph.hpp:511:20: warning: 'std::string gmum::writeToGraphML(gmum::GNGGraph&, std::string)' defined but not used [-Wunused-function] static std::string writeToGraphML(GNGGraph &g, string filename) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" --std=c++0x -O2 -Wall -gdwarf-2 -mtune=core2 -c gng/gng_server.cpp -o gng/gng_server.o In file included from gng/gng_server.cpp:6:0: ../inst/include/utils/utils.h:51:0: warning: "DBG" redefined #define DBG(verbosity, level, text) ^ In file included from ../inst/include/utils/utils.h:20:0, from gng/gng_server.cpp:6: ../inst/include/utils/logger.h:29:0: note: this is the location of the previous definition #define DBG(logger, level, text) ^ In file included from ../inst/include/gng/gng_graph.h:163:0, from ../inst/include/gng/gng_configuration.h:18, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng_server.h:11, from gng/gng_server.cpp:8: ../inst/include/gng/gng_graph.hpp: In function 'void gmum::writeToGraphML(gmum::GNGGraph&, std::ostream&)': ../inst/include/gng/gng_graph.hpp:471:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i <= g.get_maximum_index(); ++i) { ^ In file included from ../inst/include/gng/gng_algorithm.h:14:0, from ../inst/include/gng/gng_server.h:11, from gng/gng_server.cpp:8: ../inst/include/gng/gng_lazy_error_heap.h: In constructor 'gmum::GNGLazyErrorHeap::GNGLazyErrorHeap()': ../inst/include/gng/gng_lazy_error_heap.h:52:6: warning: 'gmum::GNGLazyErrorHeap::m_buffer_size' will be initialized after [-Wreorder] int m_buffer_size; ^ ../inst/include/gng/gng_lazy_error_heap.h:67:28: warning: base 'gmum::Heap' [-Wreorder] m_buffer_size(0), super() { ^ ../inst/include/gng/gng_lazy_error_heap.h:66:2: warning: when initialized here [-Wreorder] GNGLazyErrorHeap() : ^ gng/gng_server.cpp: In member function 'void GNGServer::init(GNGConfiguration, std::istream*)': gng/gng_server.cpp:90:81: warning: 'auto_ptr' is deprecated (declared at D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/backward/auto_ptr.h:87) [-Wdeprecated-declarations] GNGDatasetSimple::Sampling, current_configuration.seed, m_logger)); ^ gng/gng_server.cpp:99:16: warning: 'auto_ptr' is deprecated (declared at D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/backward/auto_ptr.h:87) [-Wdeprecated-declarations] m_logger)); ^ gng/gng_server.cpp:106:82: warning: 'auto_ptr' is deprecated (declared at D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/backward/auto_ptr.h:87) [-Wdeprecated-declarations] GNGDatasetSimple::Sequential, current_configuration.seed, m_logger)); ^ gng/gng_server.cpp:159:30: warning: 'auto_ptr' is deprecated (declared at D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/backward/auto_ptr.h:87) [-Wdeprecated-declarations] m_logger)); ^ gng/gng_server.cpp: In member function 'int GNGServer::Rpredict(Rcpp::NumericVector&)': gng/gng_server.cpp:362:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(r_ex.size() > current_configuration.dim){ ^ gng/gng_server.cpp: In member function 'Rcpp::NumericVector GNGServer::RgetClustering()': gng/gng_server.cpp:373:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(size_t i=0;i::GNGDatasetSimple(gmum::recursive_mutex*, unsigned int, bool, gmum::GNGDatasetSimple::AccessMethod, int, boost::shared_ptr) [with T = double; gmum::recursive_mutex = tthread::recursive_mutex]': gng/gng_server.cpp:90:80: required from here ../inst/include/gng/gng_dataset.h:74:7: warning: 'gmum::GNGDatasetSimple::store_extra_' will be initialized after [-Wreorder] bool store_extra_; ^ ../inst/include/gng/gng_dataset.h:66:21: warning: 'const unsigned int gmum::GNGDatasetSimple::dim_' [-Wreorder] const unsigned int dim_; ^ ../inst/include/gng/gng_dataset.h:90:2: warning: when initialized here [-Wreorder] GNGDatasetSimple(gmum::recursive_mutex *mutex, unsigned int dim, ^ ../inst/include/gng/gng_dataset.h:84:4: warning: 'gmum::GNGDatasetSimple::access_method_' will be initialized after [-Wreorder] } access_method_; ^ ../inst/include/gng/gng_dataset.h:75:15: warning: 'unsigned int gmum::GNGDatasetSimple::current_example_' [-Wreorder] unsigned int current_example_; ^ ../inst/include/gng/gng_dataset.h:90:2: warning: when initialized here [-Wreorder] GNGDatasetSimple(gmum::recursive_mutex *mutex, unsigned int dim, ^ In file included from ../inst/include/gng/gng_configuration.h:18:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng_server.h:11, from gng/gng_server.cpp:8: ../inst/include/gng/gng_graph.hpp: In instantiation of 'gmum::RAMGNGGraph::RAMGNGGraph(Mutex*, unsigned int, int, gmum::GNGGraph::GNGDistanceFunction, boost::shared_ptr) [with Node = GNGNode; Edge = GNGEdge; Mutex = tthread::recursive_mutex]': gng/gng_server.cpp:129:17: required from here ../inst/include/gng/gng_graph.h:154:6: warning: 'gmum::RAMGNGGraph::maximum_index' will be initialized after [-Wreorder] int maximum_index; ^ ../inst/include/gng/gng_graph.h:148:10: warning: 'tthread::recursive_mutex* gmum::RAMGNGGraph::mutex' [-Wreorder] Mutex * mutex; ^ In file included from ../inst/include/gng/gng_graph.h:163:0, from ../inst/include/gng/gng_configuration.h:18, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng_server.h:11, from gng/gng_server.cpp:8: ../inst/include/gng/gng_graph.hpp:21:1: warning: when initialized here [-Wreorder] RAMGNGGraph::RAMGNGGraph(Mutex *mutex, unsigned int dim, ^ In file included from ../inst/include/gng/gng_configuration.h:18:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng_server.h:11, from gng/gng_server.cpp:8: ../inst/include/gng/gng_graph.h:155:22: warning: 'gmum::RAMGNGGraph::gng_dim' will be initialized after [-Wreorder] unsigned int nodes, gng_dim; ^ ../inst/include/gng/gng_graph.h:108:6: warning: 'int gmum::RAMGNGGraph::first_free' [-Wreorder] int first_free; ^ In file included from ../inst/include/gng/gng_graph.h:163:0, from ../inst/include/gng/gng_configuration.h:18, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng_server.h:11, from gng/gng_server.cpp:8: ../inst/include/gng/gng_graph.hpp:21:1: warning: when initialized here [-Wreorder] RAMGNGGraph::RAMGNGGraph(Mutex *mutex, unsigned int dim, ^ In file included from ../inst/include/gng/gng_configuration.h:18:0, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng_server.h:11, from gng/gng_server.cpp:8: ../inst/include/gng/gng_graph.h:155:15: warning: 'gmum::RAMGNGGraph::nodes' will be initialized after [-Wreorder] unsigned int nodes, gng_dim; ^ ../inst/include/gng/gng_graph.h:109:22: warning: 'gmum::GNGGraph::GNGDistanceFunction gmum::RAMGNGGraph::dist_fnc' [-Wreorder] GNGDistanceFunction dist_fnc; ^ In file included from ../inst/include/gng/gng_graph.h:163:0, from ../inst/include/gng/gng_configuration.h:18, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng_server.h:11, from gng/gng_server.cpp:8: ../inst/include/gng/gng_graph.hpp:21:1: warning: when initialized here [-Wreorder] RAMGNGGraph::RAMGNGGraph(Mutex *mutex, unsigned int dim, ^ ../inst/include/gng/gng_graph.hpp: In instantiation of 'gmum::RAMGNGGraph::~RAMGNGGraph() [with Node = GNGNode; Edge = GNGEdge; Mutex = tthread::recursive_mutex]': D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/backward/auto_ptr.h:170:21: required from 'std::auto_ptr< >::~auto_ptr() [with _Tp = gmum::RAMGNGGraph]' gng/gng_server.cpp:129:18: required from here ../inst/include/gng/gng_graph.hpp:50:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < g.size(); ++i) { ^ ../inst/include/gng/gng_graph.hpp: In instantiation of 'double gmum::RAMGNGGraph::get_euclidean_dist(const double*, const double*) const [with Node = GNGNode; Edge = GNGEdge; Mutex = tthread::recursive_mutex]': gng/gng_server.cpp:494:1: required from here ../inst/include/gng/gng_graph.hpp:104:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < this->gng_dim; ++i) ^ ../inst/include/gng/gng_graph.hpp: In instantiation of 'void gmum::RAMGNGGraph::load(std::istream&) [with Node = GNGNode; Edge = GNGEdge; Mutex = tthread::recursive_mutex; std::istream = std::basic_istream]': gng/gng_server.cpp:494:1: required from here ../inst/include/gng/gng_graph.hpp:387:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (gng_endpoint_index > i) ^ ../inst/include/gng/gng_graph.hpp: In instantiation of 'void gmum::RAMGNGGraph::serialize(std::ostream&) [with Node = GNGNode; Edge = GNGEdge; Mutex = tthread::recursive_mutex; std::ostream = std::basic_ostream]': gng/gng_server.cpp:494:1: required from here ../inst/include/gng/gng_graph.hpp:303:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < g.size(); ++i) { ^ ../inst/include/gng/gng_graph.hpp:318:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < g.size(); ++i) { ^ ../inst/include/gng/gng_graph.hpp:328:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < g.size(); ++i) { ^ In file included from ../inst/include/gng/gng_algorithm.h:12:0, from ../inst/include/gng/gng_server.h:11, from gng/gng_server.cpp:8: ../inst/include/gng/gng_dataset.h: In instantiation of 'unsigned int gmum::GNGDatasetSimple::drawExample() [with T = double]': gng/gng_server.cpp:494:1: required from here ../inst/include/gng/gng_dataset.h:129:24: warning: variable 'ex' set but not used [-Wunused-but-set-variable] const double * ex; ^ In file included from ../inst/include/gng/gng_graph.h:163:0, from ../inst/include/gng/gng_configuration.h:18, from ../inst/include/gng/gng_dataset.h:15, from ../inst/include/gng/gng_algorithm.h:12, from ../inst/include/gng/gng_server.h:11, from gng/gng_server.cpp:8: ../inst/include/gng/gng_graph.hpp: In instantiation of 'void gmum::RAMGNGGraph::resizeGraph() [with Node = GNGNode; Edge = GNGEdge; Mutex = tthread::recursive_mutex]': ../inst/include/gng/gng_graph.hpp:139:9: required from 'int gmum::RAMGNGGraph::newNode(const double*) [with Node = GNGNode; Edge = GNGEdge; Mutex = tthread::recursive_mutex]' gng/gng_server.cpp:494:1: required from here ../inst/include/gng/gng_graph.hpp:422:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = previous_size; i < 2 * previous_size; ++i) { ^ In file included from gng/gng_server.cpp:6:0: ../inst/include/utils/utils.h: At global scope: ../inst/include/utils/utils.h:123:12: warning: 'int __rnd(int, int)' defined but not used [-Wunused-function] static int __rnd(int min, int max) { ^ ../inst/include/utils/utils.h:127:12: warning: 'int __int_rnd(int, int)' defined but not used [-Wunused-function] static int __int_rnd(int min, int max) { ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -gdwarf-2 -std=gnu99 -mtune=core2 -c svmlight/svm_common.c -o svmlight/svm_common.o d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -gdwarf-2 -std=gnu99 -mtune=core2 -c svmlight/svm_hideo.c -o svmlight/svm_hideo.o svmlight/svm_hideo.c: In function 'optimize_hildreth_despo': svmlight/svm_hideo.c:482:13: warning: 'g0_b2' may be used uninitialized in this function [-Wmaybe-uninitialized] g0_b2+=start[i]*g[i*n+j]; ^ svmlight/svm_hideo.c:461:13: warning: 'g0_b1' may be used uninitialized in this function [-Wmaybe-uninitialized] g0_b1+=start[i]*g[i*n+j]; ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R-3.3.2/include" -DNDEBUG -DNDEBUG_GMUM -DARMA_DONT_USE_CXX11 -DRCPP_INTERFACE -DARMA_64BIT_WORD -ID:/RCompile/recent/R-3.3.2/include -ID:/RCompile/recent/R-3.3.2/include/x64 -Id:/RCompile/CRANpkg/lib/3.3/Rcpp/include -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I ../inst/include/svmlight -I ../inst/include/utils -I ../inst/include -I ../inst/include/cec -I ../inst/include/gng -I ../inst/include/svm -mtune=native -static-libstdc++ -static-libgcc -lstdc++ -lpthread -I"d:/RCompile/CRANpkg/lib/3.3/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.3/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/lib/3.3/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O3 -Wall -gdwarf-2 -std=gnu99 -mtune=core2 -c svmlight/svm_learn.c -o svmlight/svm_learn.o svmlight/svm_learn.c: In function 'svm_learn_classification': svmlight/svm_learn.c:64:42: warning: variable 'runtime_start_xa' set but not used [-Wunused-but-set-variable] long loocomputed=0,runtime_start_loo=0,runtime_start_xa=0; ^ svmlight/svm_learn.c:64:22: warning: variable 'runtime_start_loo' set but not used [-Wunused-but-set-variable] long loocomputed=0,runtime_start_loo=0,runtime_start_xa=0; ^ svmlight/svm_learn.c:59:22: warning: variable 'runtime_end' set but not used [-Wunused-but-set-variable] long runtime_start,runtime_end; ^ svmlight/svm_learn.c:59:8: warning: variable 'runtime_start' set but not used [-Wunused-but-set-variable] long runtime_start,runtime_end; ^ svmlight/svm_learn.c:57:28: warning: variable 'example_length' set but not used [-Wunused-but-set-variable] double loss,model_length,example_length; ^ svmlight/svm_learn.c: In function 'svm_learn_regression': svmlight/svm_learn.c:496:10: warning: variable 'r_delta_sq' set but not used [-Wunused-but-set-variable] double r_delta_sq=0,r_delta,r_delta_avg; ^ svmlight/svm_learn.c:493:22: warning: variable 'runtime_end' set but not used [-Wunused-but-set-variable] long runtime_start,runtime_end; ^ svmlight/svm_learn.c:493:8: warning: variable 'runtime_start' set but not used [-Wunused-but-set-variable] long runtime_start,runtime_end; ^ svmlight/svm_learn.c:491:28: warning: variable 'example_length' set but not used [-Wunused-but-set-variable] double loss,model_length,example_length; ^ svmlight/svm_learn.c: In function 'svm_learn_optimization': svmlight/svm_learn.c:891:10: warning: variable 'r_delta_sq' set but not used [-Wunused-but-set-variable] double r_delta_sq=0,r_delta,r_delta_avg; ^ svmlight/svm_learn.c:888:22: warning: variable 'runtime_end' set but not used [-Wunused-but-set-variable] long runtime_start,runtime_end; ^ svmlight/svm_learn.c:888:8: warning: variable 'runtime_start' set but not used [-Wunused-but-set-variable] long runtime_start,runtime_end; ^ svmlight/svm_learn.c:886:28: warning: variable 'example_length' set but not used [-Wunused-but-set-variable] double loss,model_length,example_length; ^ svmlight/svm_learn.c: In function 'optimize_to_convergence': svmlight/svm_learn.c:1212:10: warning: variable 'criterion' set but not used [-Wunused-but-set-variable] double criterion,eq; ^ svmlight/svm_learn.c: In function 'optimize_to_convergence_sharedslack': svmlight/svm_learn.c:1649:10: warning: variable 'criterion' set but not used [-Wunused-but-set-variable] double criterion,eq_target; ^ svmlight/svm_learn.c: In function 'distribute_alpha_t_greedily': svmlight/svm_learn.c:3837:8: warning: variable 'best_depth' set but not used [-Wunused-but-set-variable] long best_depth=0; ^ d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -shared -static-libgcc -o gmum.r.dll tmp.def svm/libsvm_runner.o svm/svm.o svm/svm_basic.o svm/svm_client.o svm/svm_utils.o svm/svm_wrapper_module.o svm/svmlight_runner.o svm/two_e_svm_post.o svm/two_e_svm_pre.o svm/validator_runner.o cec/assignment.o cec/cec.o cec/cec_configuration.o cec/cec_module.o cec/centroids_assignment.o cec/cluster.o cec/cluster_custom_function.o cec/hartigan.o cec/kmeanspp_assignment.o cec/random_assignment.o utils/threading.o utils/tinythread.o utils/utils.o gng/gng_algorithm.o gng/gng_configuration.o gng/gng_module.o gng/gng_server.o svmlight/svm_common.o svmlight/svm_hideo.o svmlight/svm_learn.o -LD:/RCompile/recent/R-3.3.2/bin/x64 -lRlapack -LD:/RCompile/recent/R-3.3.2/bin/x64 -lRblas -LD:/RCompile/recent/R-3.3.2/bin/x64 -lR -lm -static-libstdc++ -static-libgcc -lstdc++ -lpthread -Ld:/Compiler/gcc-4.9.3/local330/lib/i386 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/RCompile/recent/R-3.3.2/bin/i386 -lR D:/RCompile/recent/R-3.3.2/bin/x64/Rlapack.dll: file not recognized: File format not recognized collect2.exe: error: ld returned 1 exit status make[1]: Leaving directory `/cygdrive/d/temp/RtmpaKh9iD/R.INSTALL3cc70897ea/gmum.r/src-i386' make[1]: Entering directory `/cygdrive/d/temp/RtmpaKh9iD/R.INSTALL3cc70897ea/gmum.r/src-i386' make[1]: Leaving directory `/cygdrive/d/temp/RtmpaKh9iD/R.INSTALL3cc70897ea/gmum.r/src-i386' no DLL was created ERROR: compilation failed for package 'gmum.r' * removing 'd:/Rcompile/CRANpkg/lib/3.3/gmum.r' * restoring previous 'd:/Rcompile/CRANpkg/lib/3.3/gmum.r'