* using log directory 'd:/Rcompile/CRANpkg/local/3.3new/gpclib.Rcheck' * using R version 3.3.0 beta (2016-04-13 r70476) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'gpclib/DESCRIPTION' ... OK * this is package 'gpclib' version '1.5-5' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'gpclib' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... NOTE Warning: no function found corresponding to methods exports from 'gpclib' for: 'coerce', 'show' A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... NOTE Warning: no function found corresponding to methods exports from 'gpclib' for: 'coerce', 'show' A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'methods' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE read.polyfile: no visible global function definition for 'as' write.polyfile: no visible global function definition for 'is' write.polyfile: no visible global function definition for 'as' [,gpc.poly: no visible global function definition for 'new' append.poly,gpc.poly-gpc.poly: no visible global function definition for 'new' coerce,data.frame-gpc.poly: no visible global function definition for 'as' coerce,list-gpc.poly: no visible global function definition for 'as' coerce,matrix-gpc.poly: no visible global function definition for 'new' coerce,numeric-gpc.poly: no visible global function definition for 'new' coerce,numeric-gpc.poly.nohole: no visible global function definition for 'new' intersect,gpc.poly-gpc.poly: no visible global function definition for 'as' intersect,gpc.poly-gpc.poly: no visible global function definition for 'new' setdiff,gpc.poly-gpc.poly: no visible global function definition for 'as' setdiff,gpc.poly-gpc.poly: no visible global function definition for 'new' tristrip,gpc.poly: no visible global function definition for 'as' union,gpc.poly-gpc.poly: no visible global function definition for 'as' union,gpc.poly-gpc.poly: no visible global function definition for 'new' Undefined global functions or variables: as is new Consider adding importFrom("methods", "as", "is", "new") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [0s] OK ** running examples for arch 'x64' ... [0s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... ERROR Running the tests in 'tests/bug1.R' failed. Last 13 lines of output: 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > suppressMessages(library(gpclib)) > to_numeric <- selectMethod(coerce, c("gpc.poly", "numeric")) > load("bug1_data.RData") > plot(p) ## loads a polygon, looks fine > plot(as(vec, "gpc.poly")) ## looks fine > clip <- to_numeric(p); str(clip) num [1:17] 1 7 0 570545 7890092 ... > > ## Crashes R 2.14 and 2.15 (32-bit) on Windows > vec <- .Call("Rgpc_polygon_clip", vec, clip, 3, PACKAGE="gpclib") ** running tests for arch 'x64' ... [1s] OK Running 'bug1.R' [0s] Comparing 'bug1.Rout' to 'bug1.Rout.save' ... OK Running 'reg-tests.R' [1s] Comparing 'reg-tests.Rout' to 'reg-tests.Rout.save' ...58c58 < Formal class 'gpc.poly' [package "gpclib"] with 1 slot --- > Formal class 'gpc.poly' [package "gpclib"] with 1 slots 68c68 < Formal class 'gpc.poly' [package "gpclib"] with 1 slot --- > Formal class 'gpc.poly' [package "gpclib"] with 1 slots 83c83 < Formal class 'gpc.poly' [package "gpclib"] with 1 slot --- > Formal class 'gpc.poly' [package "gpclib"] with 1 slots * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 5 NOTEs