* using log directory 'd:/Rcompile/CRANpkg/local/3.3/gpmap.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'gpmap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gpmap' version '0.1.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gpmap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Checking should be performed on sources prepared by 'R CMD build'.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'foreach' 'ggplot2' 'isotone' 'plyr'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
decompose_monotone: no visible global function definition for '%dopar%'
decompose_monotone: no visible global function definition for 'foreach'
decompose_monotone: no visible global function definition for '%do%'
decompose_monotone_single: no visible global function definition for
  '%dopar%'
decompose_monotone_single: no visible global function definition for
  'foreach'
decompose_monotone_single: no visible global function definition for
  'laply'
decompose_monotone_single: no visible global function definition for
  'var'
degree_of_monotonicity: no visible global function definition for
  '%do%'
degree_of_monotonicity: no visible global function definition for
  'foreach'
degree_of_monotonicity_single: no visible global function definition
  for 'aaply'
monotone_regression: no visible global function definition for
  'activeSet'
partial_genotype_order: no visible global function definition for
  'aaply'
plot1_dec: no visible global function definition for '%do%'
plot1_dec: no visible global function definition for 'foreach'
plot1_dec: no visible global function definition for 'ggplot'
plot1_dec: no visible global function definition for 'aes_string'
plot1_dec: no visible global function definition for 'geom_point'
plot1_dec: no visible global function definition for 'facet_wrap'
plot1_dec: no visible global function definition for 'labs'
plot1_orig: no visible global function definition for '%do%'
plot1_orig: no visible global function definition for 'foreach'
plot1_orig: no visible global function definition for 'ggplot'
plot1_orig: no visible global function definition for 'aes_string'
plot1_orig: no visible global function definition for 'geom_line'
plot1_orig: no visible global function definition for 'labs'
plot2_dec: no visible global function definition for '%do%'
plot2_dec: no visible global function definition for 'foreach'
plot2_dec: no visible global function definition for 'ggplot'
plot2_dec: no visible global function definition for 'aes_string'
plot2_dec: no visible global function definition for 'geom_line'
plot2_dec: no visible global function definition for 'facet_wrap'
plot2_dec: no visible global function definition for 'labs'
plot2_orig: no visible global function definition for '%do%'
plot2_orig: no visible global function definition for 'foreach'
plot2_orig: no visible global function definition for 'ggplot'
plot2_orig: no visible global function definition for 'aes_string'
plot2_orig: no visible global function definition for 'geom_line'
plot2_orig: no visible global function definition for 'labs'
plot3_dec: no visible global function definition for '%do%'
plot3_dec: no visible global function definition for 'foreach'
plot3_dec: no visible global function definition for 'ggplot'
plot3_dec: no visible global function definition for 'aes_string'
plot3_dec: no visible global function definition for 'geom_line'
plot3_dec: no visible global function definition for 'facet_grid'
plot3_dec: no visible global function definition for 'as.formula'
plot3_dec: no visible global function definition for 'labs'
plot3_orig: no visible global function definition for '%do%'
plot3_orig: no visible global function definition for 'foreach'
plot3_orig: no visible global function definition for 'ggplot'
plot3_orig: no visible global function definition for 'aes_string'
plot3_orig: no visible global function definition for 'geom_line'
plot3_orig: no visible global function definition for 'facet_wrap'
plot3_orig: no visible global function definition for 'as.formula'
plot3_orig: no visible global function definition for 'labs'
Undefined global functions or variables:
  %do% %dopar% aaply activeSet aes_string as.formula facet_grid
  facet_wrap foreach geom_line geom_point ggplot labs laply var
Consider adding
  importFrom("stats", "as.formula", "var")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [3s] OK
* checking differences from 'gpmap-Ex.Rout' to 'gpmap-Ex.Rout.save' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [3s] OK
  Running 'genotype_test.R' [1s]
  Comparing 'genotype_test.Rout' to 'genotype_test.Rout.save' ... OK
  Running 'test_code_example.R' [2s]
  Comparing 'test_code_example.Rout' to 'test_code_example.Rout.save' ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs