* using log directory 'd:/Rcompile/CRANpkg/local/3.3/humarray.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'humarray/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'humarray' version '1.0.2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'humarray' can be installed ... WARNING Found the following significant warnings: Warning: multiple methods tables found for 'colMeans' Warning: multiple methods tables found for 'colSums' Warning: multiple methods tables found for 'rowMeans' Warning: multiple methods tables found for 'rowSums' See 'd:/Rcompile/CRANpkg/local/3.3/humarray.Rcheck/00install.out' for details. * checking installed package size ... NOTE installed size is 5.3Mb sub-directories of 1Mb or more: data 4.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ERROR Running examples in 'humarray-Ex.R' failed The error most likely occurred in: > ### Name: get.immunobase.snps > ### Title: Download GWAS hits from t1dbase.org > ### Aliases: get.immunobase.snps > > ### ** Examples > > get.immunobase.snps(disease="CEL") # get SNP ids for celiac disease attempting to download CEL hits from t1dbase Warning in download.file(urL, filenm, quiet = T) : InternetOpenUrl failed: 'Eine Umleitungsanforderung ändert eine nicht sichere in eine sichere Verbindung.' Error in get.immunobase.snps(disease = "CEL") : couldn't reach t1dbase website at: http://www.immunobase.org/webservice/RegionDownloads/=/model/variantsTAB/species=Human&disease_id=12&type=assoc&build=GRCh37 Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 WARNING, 1 NOTE