* using log directory 'd:/Rcompile/CRANpkg/local/3.3/klaR.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'klaR/DESCRIPTION' ... OK * this is package 'klaR' version '0.6-12' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'klaR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE 'library' or 'require' calls in package code: 'e1071' 'rpart' 'scatterplot3d' 'som' Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE EDAM: no visible binding for global variable 'var' EDAM : sim.ann: no visible global function definition for 'runif' EDAM: no visible global function definition for 'dist' EDAM: no visible global function definition for 'flush.console' NaiveBayes.default : est : : no visible global function definition for 'density' NaiveBayes.default : est: no visible binding for global variable 'sd' NaiveBayes.formula: no visible binding for global variable 'na.pass' NaiveBayes.formula: no visible global function definition for 'model.extract' b.scal : betaregion: no visible global function definition for 'var' b.scal : betaregion: no visible global function definition for 'qbeta' b.scal : betaregion: no visible global function definition for 'pbeta' benchB3: no visible global function definition for 'data' benchB3: no visible global function definition for 'predict' classscatter: no visible global function definition for 'terms' classscatter: no visible global function definition for 'predict' classscatter: no visible global function definition for 'plot' cond.index: no visible global function definition for 'lm' corclust: no visible global function definition for 'cor' corclust: no visible global function definition for 'hclust' corclust: no visible global function definition for 'plot' corclust: no visible global function definition for 'abline' dkernel: no visible global function definition for 'density' drawparti: no visible global function definition for 'cm.colors' drawparti: no visible global function definition for 'predict' drawparti: no visible global function definition for 'box' drawparti: no visible global function definition for 'points' drawparti: no visible global function definition for 'contour' drawparti: no visible global function definition for 'legend' drawparti: no visible global function definition for 'par' drawparti: no visible global function definition for 'mtext' e.scal: no visible global function definition for 'optimize' friedman.data : rfried: no visible global function definition for 'rnorm' greedy.wilks.default: no visible global function definition for 'aov' greedy.wilks.default: no visible global function definition for 'manova' greedy.wilks.default: no visible global function definition for 'pf' greedy.wilks.default: no visible global function definition for 'as.formula' greedy.wilks.formula: no visible global function definition for 'model.response' greedy.wilks.formula: no visible global function definition for 'model.matrix' greedy.wilks.formula: no visible global function definition for 'as.formula' level_shardsplot: no visible global function definition for 'colorRamp' level_shardsplot: no visible global function definition for 'par' level_shardsplot: no visible global function definition for 'rgb' level_shardsplot: no visible global function definition for 'rainbow' level_shardsplot: no visible global function definition for 'topo.colors' level_shardsplot: no visible global function definition for 'gray' level_shardsplot: no visible global function definition for 'legend' level_shardsplot: no visible global function definition for 'mtext' loclda.formula: no visible binding for global variable 'na.fail' loclda.formula: no visible global function definition for 'model.response' loclda.formula: no visible global function definition for 'model.matrix' loclda.formula: no visible global function definition for '.getXlevels' loclda.matrix: no visible binding for global variable 'na.fail' meclight.default : error: no visible global function definition for 'predict' meclight.default: no visible global function definition for 'optim' meclight.formula: no visible binding for global variable 'na.fail' meclight.formula: no visible global function definition for 'model.response' meclight.formula: no visible global function definition for 'model.matrix' meclight.matrix: no visible binding for global variable 'na.fail' nm.formula: no visible binding for global variable 'na.fail' nm.formula: no visible global function definition for 'model.response' nm.formula: no visible global function definition for 'model.matrix' nm.formula: no visible global function definition for '.getXlevels' nm.matrix: no visible binding for global variable 'na.fail' partimat.default: no visible global function definition for 'plot.new' partimat.default: no visible global function definition for 'par' partimat.default: no visible global function definition for 'axis' partimat.default: no visible global function definition for 'plot' partimat.default: no visible global function definition for 'title' partimat.formula: no visible binding for global variable 'na.fail' partimat.formula: no visible global function definition for 'model.response' partimat.formula: no visible global function definition for 'model.matrix' partimat.matrix: no visible binding for global variable 'na.fail' plineplot: no visible global function definition for 'terms' plineplot: no visible global function definition for 'predict' plineplot: no visible global function definition for 'par' plineplot: no visible global function definition for 'plot' plineplot: no visible global function definition for 'points' plot.NaiveBayes: no visible global function definition for 'rainbow' plot.NaiveBayes: no visible global function definition for 'par' plot.NaiveBayes: no visible global function definition for 'dnorm' plot.NaiveBayes: no visible global function definition for 'plot' plot.NaiveBayes: no visible global function definition for 'lines' plot.NaiveBayes: no visible global function definition for 'legend' plot.NaiveBayes: no visible global function definition for 'mosaicplot' plot.rda: no visible global function definition for 'par' plot.rda: no visible global function definition for 'plot' plot.rda: no visible global function definition for 'text' plot.rda: no visible global function definition for 'axis' plot.rda: no visible global function definition for 'lines' plot.rda: no visible global function definition for 'points' plot.stepclass: no visible global function definition for 'par' plot.stepclass: no visible global function definition for 'plot' plot.stepclass: no visible global function definition for 'axis' plot.woe: no visible global function definition for 'barplot' plot.woe: no visible global function definition for 'lines' plot.woe: no visible global function definition for 'par' plot.woe: no visible global function definition for 'plot' plot.woe: no visible global function definition for 'axis' predict.NaiveBayes : Lfoo : tempfoo: no visible global function definition for 'dnorm' predict.loclda : cov.pooled : : no visible global function definition for 'cov.wt' predict.loclda: no visible global function definition for 'model.frame' predict.loclda: no visible global function definition for 'as.formula' predict.loclda: no visible global function definition for 'delete.response' predict.loclda: no visible global function definition for 'model.matrix' predict.locpvs: no visible global function definition for 'predict' predict.meclight: no visible global function definition for 'predict' predict.meclight: no visible global function definition for 'terms' predict.pvs: no visible global function definition for 'model.frame' predict.pvs: no visible global function definition for 'as.formula' predict.pvs: no visible global function definition for 'delete.response' predict.pvs: no visible global function definition for 'model.matrix' predict.pvs: no visible global function definition for 'predict' predict.rda: no visible global function definition for 'model.frame' predict.rda: no visible global function definition for 'as.formula' predict.rda: no visible global function definition for 'delete.response' predict.rda: no visible global function definition for 'model.matrix' predict.sknn: no visible global function definition for 'model.frame' predict.sknn: no visible global function definition for 'as.formula' predict.sknn: no visible global function definition for 'delete.response' predict.sknn: no visible global function definition for 'model.matrix' predict.svmlight: no visible global function definition for 'model.frame' predict.svmlight: no visible global function definition for 'as.formula' predict.svmlight: no visible global function definition for 'delete.response' predict.svmlight: no visible global function definition for 'model.matrix' predict.svmlight: no visible global function definition for 'write.table' predict.svmlight: no visible global function definition for 'read.table' pvs.default : calc.classcompare : : no visible global function definition for 'ks.test' pvs.formula: no visible global function definition for 'model.response' pvs.formula: no visible global function definition for 'model.matrix' quadplot: no visible global function definition for 'rainbow' quadplot: no visible global function definition for 'par' rda.default : nelder.mead : rmunif: no visible global function definition for 'runif' rda.default : nelder.mead : rlog: no visible global function definition for 'runif' rda.default : nelder.mead: no visible global function definition for 'flush.console' rda.default : nelder.mead: no visible global function definition for 'sd' rda.default: no visible global function definition for 'flush.console' rda.default: no visible global function definition for 'aggregate' rda.default: no visible binding for global variable 'var' rda.default: no visible global function definition for 'runif' rda.default: no visible global function definition for 'optimize' rda.formula: no visible global function definition for 'model.response' rda.formula: no visible global function definition for 'model.matrix' shardsplot: no visible binding for global variable 'var' shardsplot: no visible global function definition for 'dist' shardsplot: no visible global function definition for 'lines' shardsplot: no visible global function definition for 'rainbow' shardsplot: no visible global function definition for 'topo.colors' shardsplot: no visible global function definition for 'gray' shardsplot: no visible global function definition for 'rgb' shardsplot: no visible global function definition for 'hsv' shardsplot: no visible global function definition for 'col2rgb' shardsplot: no visible global function definition for 'polygon' shardsplot: no visible global function definition for 'text' shardsplot: no visible global function definition for 'points' sknn.formula: no visible binding for global variable 'na.fail' sknn.formula: no visible global function definition for 'model.response' sknn.formula: no visible global function definition for 'model.matrix' sknn.formula: no visible global function definition for '.getXlevels' sknn.matrix: no visible binding for global variable 'na.fail' stepclass.default : cv.rate: no visible global function definition for 'predict' stepclass.default: no visible global function definition for 'flush.console' stepclass.default: no visible global function definition for 'predict' stepclass.default: no visible global function definition for 'as.formula' stepclass.formula: no visible global function definition for 'terms' stepclass.formula: no visible global function definition for 'as.formula' svmlight.default: no visible global function definition for 'write.table' svmlight.formula: no visible binding for global variable 'na.fail' svmlight.formula: no visible global function definition for 'model.response' svmlight.formula: no visible global function definition for 'model.matrix' svmlight.matrix: no visible binding for global variable 'na.fail' triframe: no visible global function definition for 'text' trilines: no visible global function definition for 'lines' triperplines: no visible global function definition for 'lines' triplot: no visible global function definition for 'par' triplot: no visible global function definition for 'plot.new' triplot: no visible global function definition for 'plot.window' triplot: no visible global function definition for 'title' tripoints: no visible global function definition for 'points' woe.default: no visible global function definition for 'predict' woe.formula: no visible global function definition for 'model.response' woe.formula: no visible global function definition for 'model.frame' Undefined global functions or variables: .getXlevels abline aggregate aov as.formula axis barplot box cm.colors col2rgb colorRamp contour cor cov.wt data delete.response density dist dnorm flush.console gray hclust hsv ks.test legend lines lm manova model.extract model.frame model.matrix model.response mosaicplot mtext na.fail na.pass optim optimize par pbeta pf plot plot.new plot.window points polygon predict qbeta rainbow read.table rgb rnorm runif sd terms text title topo.colors var write.table Consider adding importFrom("grDevices", "cm.colors", "col2rgb", "colorRamp", "gray", "hsv", "rainbow", "rgb", "topo.colors") importFrom("graphics", "abline", "axis", "barplot", "box", "contour", "legend", "lines", "mosaicplot", "mtext", "par", "plot", "plot.new", "plot.window", "points", "polygon", "text", "title") importFrom("stats", ".getXlevels", "aggregate", "aov", "as.formula", "cor", "cov.wt", "delete.response", "density", "dist", "dnorm", "hclust", "ks.test", "lm", "manova", "model.extract", "model.frame", "model.matrix", "model.response", "na.fail", "na.pass", "optim", "optimize", "pbeta", "pf", "predict", "qbeta", "rnorm", "runif", "sd", "terms", "var") importFrom("utils", "data", "flush.console", "read.table", "write.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [24s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [14s] OK Running 'EDAM.R' [2s] Comparing 'EDAM.Rout' to 'EDAM.Rout.save' ... OK Running 'testsklaR.R' [11s] Comparing 'testsklaR.Rout' to 'testsklaR.Rout.save' ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs