* using log directory 'd:/Rcompile/CRANpkg/local/3.3/kobe.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'kobe/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'kobe' version '1.3.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'kobe' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getBSP: no visible global function definition for 'read.csv'
io2box : <anonymous>: no visible global function definition for
  'quantile'
io2box : <anonymous>: no visible global function definition for
  'median'
ioAspic : <anonymous>: no visible global function definition for
  'quantile'
ioAspic : <anonymous>: no visible global function definition for
  'median'
ioBsp : <anonymous>: no visible global function definition for
  'quantile'
ioBsp : <anonymous>: no visible global function definition for 'median'
ioMFCL : <anonymous>: no visible global function definition for
  'quantile'
ioMFCL : <anonymous>: no visible global function definition for
  'median'
ioSS: no visible global function definition for 'read.csv'
ioSS : <anonymous>: no visible global function definition for
  'quantile'
ioSS : <anonymous>: no visible global function definition for 'median'
ioSS3: no visible global function definition for 'read.csv'
ioSS3 : <anonymous>: no visible global function definition for
  'quantile'
ioSS3 : <anonymous>: no visible global function definition for 'median'
kobeInterp: no visible global function definition for
  'colorRampPalette'
kobePhaseMar: no visible global function definition for
  'colorRampPalette'
kobePhaseMar: no visible global function definition for 'grey'
kobePhaseMar : <anonymous>: no visible global function definition for
  'median'
kobePhaseMar2: no visible global function definition for
  'colorRampPalette'
kobePhaseMar2: no visible global function definition for 'grey'
kobePhaseMar2 : <anonymous>: no visible global function definition for
  'median'
kobePhaseMar3: no visible global function definition for
  'colorRampPalette'
kobePhaseMar3: no visible global function definition for 'grey'
kobePhaseMar3 : <anonymous>: no visible global function definition for
  'median'
kobeTrksFn: no visible binding for global variable 'quantile'
readKobe2box: no visible global function definition for 'read.table'
readSam: no visible global function definition for 'read.table'
theme_ms: possible error in theme(axis.text = element_text(size =
  rel(0.8)), axis.ticks = element_line(colour = "black"), legend.key =
  element_rect(colour = "grey80"), panel.background = element_rect(fill
  = "white", colour = NA), panel.border = element_rect(fill = NA,
  colour = "grey50"), panel.grid.major = element_line(colour =
  "grey90", size = 0.2), panel.grid.minor = element_line(colour =
  "grey98", size = 0.5), strip.background = element_rect(fill =
  "grey80", colour = "grey50"), strip.background = element_rect(fill =
  "grey80", : formal argument "strip.background" matched by multiple
  actual arguments
theme_ms: possible error in colour = "grey50")): formal argument
  "strip.background" matched by multiple actual arguments
theme_ms: no visible global function definition for 'modifyList'
kobe2sm,data.frame: no visible global function definition for
  'colorRampPalette'
kobe2sm,data.frame: no visible global function definition for 'par'
kobe2sm,data.frame: no visible global function definition for
  'kobe2smFn'
kobe2sm,data.frame: no visible global function definition for 'mtext'
kobe,data.frame-missing : <anonymous>: no visible global function
  definition for 'kobeFn'
Undefined global functions or variables:
  colorRampPalette grey kobe2smFn kobeFn median modifyList mtext par
  quantile read.csv read.table
Consider adding
  importFrom("grDevices", "colorRampPalette", "grey")
  importFrom("graphics", "mtext", "par")
  importFrom("stats", "median", "quantile")
  importFrom("utils", "modifyList", "read.csv", "read.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [21s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE