* using log directory 'd:/Rcompile/CRANpkg/local/3.3/ktspair.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'ktspair/DESCRIPTION' ... OK
* this is package 'ktspair' version '1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .Rbuildindex.10034
  .Rbuildindex.31551
  .Rbuildindex.31678
  .Rbuildindex.9995
  inst/doc/.fr-hy2VZf
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'ktspair' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'Biobase'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
AUC.calc: no visible global function definition for 'median'
ROC.graphic.ktsp: no visible global function definition for 'layout'
ROC.graphic.ktsp: no visible global function definition for 'par'
ROC.graphic.ktsp: no visible global function definition for 'axis'
ROC.graphic.ktsp: no visible global function definition for 'abline'
ROC.graphic.ktsp: no visible global function definition for 'points'
ROC.graphic.ktsp: no visible global function definition for 'lines'
ROC.graphic.ktsp: no visible global function definition for 'plot'
ROC.graphic.ktsp: no visible global function definition for 'legend'
ROC.graphic.ktsp: no visible global function definition for 'title'
ROC.offset: no visible global function definition for 'pData'
ROC.offset: no visible global function definition for 'exprs'
ROC.voting: no visible global function definition for 'pData'
ROC.voting: no visible global function definition for 'exprs'
ROC.voting: no visible global function definition for 'predict'
bootstrap.graphic.ktsp: no visible global function definition for
  'layout'
bootstrap.graphic.ktsp: no visible global function definition for 'par'
bootstrap.graphic.ktsp: no visible global function definition for
  'plot'
bootstrap.graphic.ktsp: no visible global function definition for
  'text'
bootstrap.graphic.ktsp: no visible global function definition for
  'points'
bootstrap.graphic.ktsp: no visible global function definition for
  'hist'
bootstrap.graphic.ktsp: no visible global function definition for
  'axis'
bootstrap.ktsp: no visible global function definition for 'exprs'
bootstrap.ktsp: no visible global function definition for
  'featureNames'
bootstrap.ktsp: no visible global function definition for 'pData'
cv: no visible global function definition for 'predict'
cv2: no visible global function definition for 'predict'
kts.pair : <anonymous>: no visible global function definition for
  'median'
ktspcalc: no visible global function definition for 'exprs'
ktspcalc: no visible global function definition for 'featureNames'
ktspcalc: no visible global function definition for 'pData'
ktspcalc2: no visible global function definition for 'exprs'
ktspcalc2: no visible global function definition for 'featureNames'
ktspcalc2: no visible global function definition for 'pData'
ktspcalc2 : <anonymous>: no visible global function definition for
  'median'
ktspcalc2 : <anonymous>: no visible global function definition for
  'na.omit'
ktspplot: no visible global function definition for 'par'
ktspplot: no visible global function definition for 'plot'
ktspplot: no visible global function definition for 'mtext'
ktspplot: no visible global function definition for 'points'
ktspplot: no visible global function definition for 'abline'
predict.ktsp: no visible global function definition for 'featureNames'
predict.ktsp: no visible global function definition for 'exprs'
summary.ktsp: no visible global function definition for 'predict'
Undefined global functions or variables:
  abline axis exprs featureNames hist layout legend lines median mtext
  na.omit pData par plot points predict text title
Consider adding
  importFrom("graphics", "abline", "axis", "hist", "layout", "legend",
             "lines", "mtext", "par", "plot", "points", "text", "title")
  importFrom("stats", "median", "na.omit", "predict")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'predict.ktsp':
  'predict.ktsp'

S3 methods shown with full name in documentation object 'print.ktsp':
  'print.ktsp'

S3 methods shown with full name in documentation object 'summary.ktsp':
  'summary.ktsp'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs