* using log directory 'd:/Rcompile/CRANpkg/local/3.3/lme4.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'lme4/DESCRIPTION' ... OK
* this is package 'lme4' version '1.1-12'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'lme4' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.3Mb
  sub-directories of 1Mb or more:
    doc        1.8Mb
    libs       2.1Mb
    testdata   1.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [34s] OK
** running examples for arch 'x64' ... [39s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ... [511s] OK
  Running 'AAAtest-all.R' [140s]
  Running 'HSAURtrees.R' [3s]
  Running 'REMLdev.R' [3s]
  Running 'ST.R' [3s]
  Running 'agridat_gotway.R' [5s]
  Running 'bootMer.R' [13s]
  Running 'boundary.R' [12s]
  Running 'condVar.R' [3s]
  Running 'confint.R' [5s]
  Running 'devCritFun.R' [3s]
  Running 'devfunQ.R' [3s]
  Running 'drop.R' [4s]
  Running 'drop1contrasts.R' [3s]
  Running 'dynload.R' [1s]
  Running 'elston.R' [4s]
  Running 'evalCall.R' [3s]
  Running 'extras.R' [3s]
  Running 'falsezero_dorie.R' [3s]
  Running 'fewlevels.R' [19s]
  Running 'getME.R' [4s]
  Running 'glmer-1.R' [5s]
  Running 'glmerControlPass.R' [17s]
  Running 'glmerWarn.R' [3s]
  Running 'glmmExt.R' [13s]
  Running 'glmmWeights.R' [12s]
  Running 'hatvalues.R' [3s]
  Running 'is.R' [4s]
  Running 'lmList-tst.R' [6s]
  Running 'lme4_nlme.R' [3s]
  Running 'lmer-0.R' [3s]
  Running 'lmer-1.R' [6s]
  Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
  Running 'lmer-conv.R' [3s]
  Running 'lmer2_ex.R' [3s]
  Running 'methods.R' [3s]
  Running 'minval.R' [3s]
  Running 'modFormula.R' [3s]
  Running 'nbinom.R' [3s]
  Running 'nlmer-conv.R' [3s]
  Running 'nlmer.R' [3s]
  Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ... OK
  Running 'offset.R' [5s]
  Running 'optimizer.R' [5s]
  Running 'polytomous.R' [3s]
  Running 'prLogistic.R' [3s]
  Running 'predict.R' [4s]
  Running 'predict_basis.R' [4s]
  Running 'predsim.R' [5s]
  Running 'priorWeights.R' [10s]
  Running 'priorWeightsModComp.R' [3s]
  Running 'profile-tst.R' [45s]
  Running 'refit.R' [31s]
  Running 'resids.R' [3s]
  Running 'respiratory.R' [13s]
  Running 'simulate.R' [7s]
  Running 'testOptControl.R' [3s]
  Running 'test_times.R' [3s]
  Running 'testcolonizer.R' [3s]
  Running 'testcrab.R' [12s]
  Running 'throw.R' [10s]
  Running 'utils.R' [0s]
  Running 'varcorr.R' [4s]
  Running 'vcov-etc.R' [3s]
** running tests for arch 'x64' ... [551s] OK
  Running 'AAAtest-all.R' [147s]
  Running 'HSAURtrees.R' [4s]
  Running 'REMLdev.R' [3s]
  Running 'ST.R' [3s]
  Running 'agridat_gotway.R' [6s]
  Running 'bootMer.R' [13s]
  Running 'boundary.R' [13s]
  Running 'condVar.R' [4s]
  Running 'confint.R' [5s]
  Running 'devCritFun.R' [4s]
  Running 'devfunQ.R' [4s]
  Running 'drop.R' [4s]
  Running 'drop1contrasts.R' [4s]
  Running 'dynload.R' [1s]
  Running 'elston.R' [4s]
  Running 'evalCall.R' [4s]
  Running 'extras.R' [3s]
  Running 'falsezero_dorie.R' [3s]
  Running 'fewlevels.R' [18s]
  Running 'getME.R' [4s]
  Running 'glmer-1.R' [6s]
  Running 'glmerControlPass.R' [16s]
  Running 'glmerWarn.R' [4s]
  Running 'glmmExt.R' [14s]
  Running 'glmmWeights.R' [12s]
  Running 'hatvalues.R' [4s]
  Running 'is.R' [4s]
  Running 'lmList-tst.R' [7s]
  Running 'lme4_nlme.R' [4s]
  Running 'lmer-0.R' [4s]
  Running 'lmer-1.R' [7s]
  Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
  Running 'lmer-conv.R' [3s]
  Running 'lmer2_ex.R' [3s]
  Running 'methods.R' [3s]
  Running 'minval.R' [4s]
  Running 'modFormula.R' [4s]
  Running 'nbinom.R' [3s]
  Running 'nlmer-conv.R' [3s]
  Running 'nlmer.R' [4s]
  Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ... OK
  Running 'offset.R' [5s]
  Running 'optimizer.R' [5s]
  Running 'polytomous.R' [3s]
  Running 'prLogistic.R' [3s]
  Running 'predict.R' [4s]
  Running 'predict_basis.R' [4s]
  Running 'predsim.R' [5s]
  Running 'priorWeights.R' [11s]
  Running 'priorWeightsModComp.R' [4s]
  Running 'profile-tst.R' [51s]
  Running 'refit.R' [29s]
  Running 'resids.R' [4s]
  Running 'respiratory.R' [13s]
  Running 'simulate.R' [8s]
  Running 'testOptControl.R' [4s]
  Running 'test_times.R' [3s]
  Running 'testcolonizer.R' [4s]
  Running 'testcrab.R' [13s]
  Running 'throw.R' [10s]
  Running 'utils.R' [0s]
  Running 'varcorr.R' [4s]
  Running 'vcov-etc.R' [4s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [115s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE