* using log directory 'd:/Rcompile/CRANpkg/local/3.3/localdepth.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'localdepth/DESCRIPTION' ... OK * this is package 'localdepth' version '0.5-7' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'localdepth' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... NOTE Calls with DUP: .C("d2Dsigma", x1 = as.double(x[, 1]), x2 = as.double(x[, 2]), y1 = as.double(y[, 1]), y2 = as.double(y[, 2]), sigma = as.double(sigma), nx = as.integer(nx), ny = as.integer(ny), depth = as.double(depth), DUP = FALSE, NAOK = FALSE, PACKAGE = "localdepth") .C("ldcircsimp", x = as.double(x), y = as.double(y), nx = as.integer(nx), ny = as.integer(ny), tau = as.double(tau), nuse = as.integer(nuse), depth = as.double(depth), localdepth = as.double(localdepth), diameters = as.double(diameters), DUP = FALSE, NAOK = FALSE, PACKAGE = "localdepth") .C("ld2Ddiamsimp", x1 = as.double(x[, 1]), x2 = as.double(x[, 2]), y1 = as.double(y[, 1]), y2 = as.double(y[, 2]), tau = as.double(tau), nx = as.integer(nx), ny = as.integer(ny), depth = as.double(depth), localdepth = as.double(localdepth), DUP = FALSE, NAOK = FALSE, PACKAGE = "localdepth") .C("ld2Dareasimp", x1 = as.double(x[, 1]), x2 = as.double(x[, 2]), y1 = as.double(y[, 1]), y2 = as.double(y[, 2]), tau = as.double(tau), nx = as.integer(nx), ny = as.integer(ny), depth = as.double(depth), localdepth = as.double(localdepth), DUP = FALSE, NAOK = FALSE, PACKAGE = "localdepth") .C("twoDdiam", x = as.double(x[, 1]), y = as.double(x[, 2]), nx = as.integer(nx), result = as.double(result), DUP = FALSE, NAOK = FALSE, PACKAGE = "localdepth") .C("twoDarea", x = as.double(x[, 1]), y = as.double(x[, 2]), nx = as.integer(nx), result = as.double(result), DUP = FALSE, NAOK = FALSE, PACKAGE = "localdepth") .C("oneDdiam", x = as.double(x), nx = as.integer(nx), result = as.double(result), DUP = FALSE, NAOK = FALSE, PACKAGE = "localdepth") .C("circdiam", x = as.double(x), nx = as.integer(nx), diameters = as.double(diameters), DUP = FALSE, NAOK = FALSE, PACKAGE = "localdepth") DUP is no longer supported and will be ignored. * checking R code for possible problems ... NOTE hsnorm: no visible global function definition for 'qnorm' hsnorm: no visible global function definition for 'pnorm' localdepth.mahalanobis: no visible global function definition for 'cov' localdepth.similarity.mahalanobis: no visible global function definition for 'cov' localdepth.simp.approx.internal: no visible global function definition for 'cov' lsdnorm: no visible global function definition for 'qnorm' lsdnorm : ldnorm.int : pdf: no visible global function definition for 'dnorm' lsdnorm : ldnorm.int : cdf: no visible global function definition for 'pnorm' lsdnorm : ldnorm.int : integr1: no visible global function definition for 'integrate' lsdnorm : ldnorm.int : integr2: no visible global function definition for 'integrate' plot.localdepth: no visible global function definition for 'plot' plot.localdepth: no visible global function definition for 'text' quantile.mahalanobis: no visible global function definition for 'cov' sdnorm: no visible global function definition for 'pnorm' Undefined global functions or variables: cov dnorm integrate plot pnorm qnorm text Consider adding importFrom("graphics", "plot", "text") importFrom("stats", "cov", "dnorm", "integrate", "pnorm", "qnorm") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [15s] OK ** running examples for arch 'x64' ... [14s] OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs