* using log directory 'd:/Rcompile/CRANpkg/local/3.3/metaMA.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'metaMA/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'metaMA' version '3.1.2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'metaMA' can be installed ... OK * checking installed package size ... NOTE installed size is 9.4Mb sub-directories of 1Mb or more: data 9.1Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE EScombination: no visible global function definition for 'model.matrix' EScombination: no visible global function definition for 'p.adjust' EScombination: no visible global function definition for 'pt' EScombination.paired: no visible global function definition for 'p.adjust' EScombination.paired: no visible global function definition for 'pt' calcfit2Diffrep: no visible global function definition for 'model.matrix' directEScombi: no visible global function definition for 'pnorm' directEScombi: no visible global function definition for 'p.adjust' directpvalcombi : fstatmeta: no visible global function definition for 'qnorm' directpvalcombi: no visible global function definition for 'pnorm' directpvalcombi: no visible global function definition for 'p.adjust' pvalcombination: no visible global function definition for 'model.matrix' pvalcombination: no visible global function definition for 'p.adjust' pvalcombination: no visible global function definition for 'pt' pvalcombination.paired: no visible global function definition for 'p.adjust' pvalcombination.paired: no visible global function definition for 'pt' Undefined global functions or variables: model.matrix p.adjust pnorm pt qnorm Consider adding importFrom("stats", "model.matrix", "p.adjust", "pnorm", "pt", "qnorm") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [8s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [9s] OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs