* using log directory 'd:/Rcompile/CRANpkg/local/3.3/mizer.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mizer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mizer' version '0.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mizer' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getFMort,MizerSim-missing: warning in get_time_elements(object,
  time_range, slot = "effort"): partial argument match of 'slot' to
  'slot_name'
getFMortGear,MizerSim-missing: warning in get_time_elements(object,
  time_range, slot = "effort"): partial argument match of 'slot' to
  'slot_name'
plotFMort,MizerSim: warning in scale_y_continuous(name = "Total fishing
  mortality", lim = c(0, max(plot_dat$value))): partial argument match
  of 'lim' to 'limits'
plotFeedingLevel,MizerSim: warning in scale_y_continuous(name =
  "Feeding Level", lim = c(0, 1)): partial argument match of 'lim' to
  'limits'
plotM2,MizerSim: warning in scale_y_continuous(name = "M2", lim = c(0,
  max(plot_dat$value))): partial argument match of 'lim' to 'limits'
MizerParams,data.frame-matrix: no visible global function definition
  for 'combn'
getCommunitySlope,MizerSim : <anonymous>: no visible global function
  definition for 'lm'
plotBiomass,MizerSim: no visible binding for global variable 'time'
plotBiomass,MizerSim: no visible binding for global variable 'value'
plotBiomass,MizerSim: no visible binding for global variable 'Species'
plotFMort,MizerSim: no visible binding for global variable 'w'
plotFMort,MizerSim: no visible binding for global variable 'value'
plotFMort,MizerSim: no visible binding for global variable 'Species'
plotFeedingLevel,MizerSim: no visible binding for global variable 'w'
plotFeedingLevel,MizerSim: no visible binding for global variable
  'value'
plotFeedingLevel,MizerSim: no visible binding for global variable
  'Species'
plotM2,MizerSim: no visible binding for global variable 'w'
plotM2,MizerSim: no visible binding for global variable 'value'
plotM2,MizerSim: no visible binding for global variable 'Species'
plotSpectra,MizerSim: no visible binding for global variable 'w'
plotSpectra,MizerSim: no visible binding for global variable 'value'
plotSpectra,MizerSim: no visible binding for global variable 'Species'
plotYield,MizerSim: no visible binding for global variable 'time'
plotYield,MizerSim: no visible binding for global variable 'value'
plotYield,MizerSim: no visible binding for global variable 'Species'
plotYieldGear,MizerSim: no visible binding for global variable 'time'
plotYieldGear,MizerSim: no visible binding for global variable 'value'
plotYieldGear,MizerSim: no visible binding for global variable
  'Species'
plotYieldGear,MizerSim: no visible binding for global variable 'gear'
Undefined global functions or variables:
  Species combn gear lm time value w
Consider adding
  importFrom("stats", "lm", "time")
  importFrom("utils", "combn")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE