* using log directory 'd:/Rcompile/CRANpkg/local/3.3/mlt.docreg.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'mlt.docreg/DESCRIPTION' ... OK
* this is package 'mlt.docreg' version '0.1-3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mlt.docreg' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... ERROR
Running the tests in 'tests/timedep_covar.R' failed.
Last 13 lines of output:
  > 
  > ## exponential model
  > fit3 <- flexsurvreg(Surv(tstart, time, status) ~ karno + karno:timegroup +
  +                      age + trt, data= vet2, dist = "exponential")
  There were 21 warnings (use warnings() to see them)
  > m <- mlt(ctm(by, shift = ~ karno + karno:timegroup + age + trt, data = vet2, todistr = "MinExtr"),
  +          data = vet2, fixed = c("log(ytime)" = 1))
  > 
  > stopifnot(all.equal(fit3$logliki, get("ll", env = environment(m$loglik))(coef(m)[-2]), 
  +                     tol = .001, check.attributes = FALSE))
  > stopifnot(all.equal(logLik(fit3), logLik(m), check.attributes = FALSE))
  Error: all.equal(logLik(fit3), logLik(m), check.attributes = FALSE) is not TRUE
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [272s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR