* using log directory 'd:/Rcompile/CRANpkg/local/3.3/mstate.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'mstate/DESCRIPTION' ... OK
* this is package 'mstate' version '0.2.9'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mstate' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'mstate-Ex.R' failed
The error most likely occurred in:

> ### Name: crprep
> ### Title: Function to create weighted data set for competing risks
> ###   analyses
> ### Aliases: crprep crprep.default
> ### Keywords: datagen survival
> 
> ### ** Examples
> 
> data(aidssi)
> aidssi.w <- crprep("time", "cause", data=aidssi, trans=c("AIDS","SI"),
+                    cens="event-free", id="patnr", keep="ccr5")
> 
> # calculate cause-specific cumulative incidence, no truncation,
> # compare with Cuminc (also from mstate)
> ci <- Cuminc(aidssi$time, aidssi$status)
Error in apply(CIs, 1, sum) : dim(X) must have a positive length
Calls: Cuminc -> apply
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'mstate-Ex.R' failed
The error most likely occurred in:

> ### Name: crprep
> ### Title: Function to create weighted data set for competing risks
> ###   analyses
> ### Aliases: crprep crprep.default
> ### Keywords: datagen survival
> 
> ### ** Examples
> 
> data(aidssi)
> aidssi.w <- crprep("time", "cause", data=aidssi, trans=c("AIDS","SI"),
+                    cens="event-free", id="patnr", keep="ccr5")
> 
> # calculate cause-specific cumulative incidence, no truncation,
> # compare with Cuminc (also from mstate)
> ci <- Cuminc(aidssi$time, aidssi$status)
Error in apply(CIs, 1, sum) : dim(X) must have a positive length
Calls: Cuminc -> apply
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: survival

Error: processing vignette 'Tutorial.Rnw' failed with diagnostics:
 chunk 55 (label = Cuminc1) 
Error in apply(CIs, 1, sum) : dim(X) must have a positive length
Execution halted

* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 1 WARNING