* using log directory 'd:/Rcompile/CRANpkg/local/3.3/nFCA.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'nFCA/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'nFCA' version '0.3' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'nFCA' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE nfca : nFCAmain: no visible global function definition for 'hist' nfca : nFCAmain: no visible global function definition for 'flush.console' nfca : nFCAmain: no visible global function definition for 'qnorm' nfca : nFCAmain: no visible global function definition for 'read.csv' nfca : nFCAmain: no visible global function definition for 'cor' nfca : nFCAmain: no visible global function definition for 'as.dist' nfca : nFCAmain: no visible global function definition for 'cophenetic' nfca : nFCAmain: no visible global function definition for 'hclust' nfca : thresholdTEST: no visible global function definition for 'read.csv' nfca : gScript: no visible global function definition for 'read.csv' nfca : gScript0: no visible global function definition for 'read.csv' nfca : gMatrix: no visible global function definition for 'read.csv' nfca: no visible global function definition for 'cor' Undefined global functions or variables: as.dist cophenetic cor flush.console hclust hist qnorm read.csv Consider adding importFrom("graphics", "hist") importFrom("stats", "as.dist", "cophenetic", "cor", "hclust", "qnorm") importFrom("utils", "flush.console", "read.csv") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [3s] OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE