* using log directory 'd:/Rcompile/CRANpkg/local/3.3/p3state.msm.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'p3state.msm/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'p3state.msm' version '1.3' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'p3state.msm' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'survival' which was already attached by Depends. Please remove these calls from your code. Package in Depends field not imported from: 'survival' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE p3state: no visible global function definition for 'survfit' p3state: no visible global function definition for 'terms' p3state: no visible global function definition for 'as.formula' p3state: no visible global function definition for 'coxph' p3state: no visible binding for global variable 'na.exclude' plot.p3state: no visible global function definition for 'matplot' plot.p3state: no visible global function definition for 'devAskNewPage' plot.p3state: no visible global function definition for 'persp' plot.p3state: no visible global function definition for 'colours' plot.p3state: no visible global function definition for 'filled.contour' Undefined global functions or variables: as.formula colours coxph devAskNewPage filled.contour matplot na.exclude persp survfit terms Consider adding importFrom("grDevices", "colours", "devAskNewPage") importFrom("graphics", "filled.contour", "matplot", "persp") importFrom("stats", "as.formula", "na.exclude", "terms") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [4s] OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs