* using log directory 'd:/Rcompile/CRANpkg/local/3.3/phylocurve.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'phylocurve/DESCRIPTION' ... OK * this is package 'phylocurve' version '2.0.6' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'phylocurve' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... ERROR Running examples in 'phylocurve-Ex.R' failed The error most likely occurred in: > ### Name: K.mult > ### Title: Test phylogenetic signal (Kmult) using phylogenetic simulation > ### Aliases: K.mult > > ### ** Examples > > rand.data <- sim.traits() > null.model <- evo.model(tree = rand.data$tree, + Y = rand.data$trait_data,method = "Pairwise ML") > > K.mult(model = null.model,nsim = 100) Warning in c.multiPhylo(obj, list(x)) : some objects not of class "phylo" or "multiPhylo": argument recursive=TRUE ignored Error in `[[<-.multiPhylo`(`*tmp*`, ..1, value = c(0.6503599778, 0.6503599778, : trying to assign an object not of class "phylo" into an object of class "multiPhylo". Calls: K.mult ... calc_denom -> $<- -> $<-.multiPhylo -> [[<- -> [[<-.multiPhylo Execution halted ** running examples for arch 'x64' ... ERROR Running examples in 'phylocurve-Ex.R' failed The error most likely occurred in: > ### Name: K.mult > ### Title: Test phylogenetic signal (Kmult) using phylogenetic simulation > ### Aliases: K.mult > > ### ** Examples > > rand.data <- sim.traits() > null.model <- evo.model(tree = rand.data$tree, + Y = rand.data$trait_data,method = "Pairwise ML") > > K.mult(model = null.model,nsim = 100) Warning in c.multiPhylo(obj, list(x)) : some objects not of class "phylo" or "multiPhylo": argument recursive=TRUE ignored Error in `[[<-.multiPhylo`(`*tmp*`, ..1, value = c(0.6503599778, 0.6503599778, : trying to assign an object not of class "phylo" into an object of class "multiPhylo". Calls: K.mult ... calc_denom -> $<- -> $<-.multiPhylo -> [[<- -> [[<-.multiPhylo Execution halted * checking PDF version of manual ... OK * DONE Status: 2 ERRORs