* using log directory 'd:/Rcompile/CRANpkg/local/3.3/psgp.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'psgp/DESCRIPTION' ... OK
* this is package 'psgp' version '0.3-6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'psgp' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'doParallel' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
learnParameters: no visible global function definition for
  'coordinates'
makePrediction: no visible global function definition for 'coordinates'
spatialPredict.psgp: no visible global function definition for
  'coordinates'
spatialPredict.psgp: no visible global function definition for
  'makeCluster'
spatialPredict.psgp: no visible global function definition for
  'registerDoParallel'
spatialPredict.psgp: no visible global function definition for
  'clusterEvalQ'
spatialPredict.psgp: no visible global function definition for
  '%dopar%'
spatialPredict.psgp: no visible global function definition for
  'foreach'
spatialPredict.psgp: no visible global function definition for
  'stopCluster'
spatialPredict.psgp: no visible global function definition for
  'SpatialPointsDataFrame'
spatialPredict.psgp: no visible global function definition for 'bbox'
spatialPredict.psgp: no visible global function definition for
  'proj4string<-'
spatialPredict.psgp: no visible global function definition for
  'proj4string'
Undefined global functions or variables:
  %dopar% SpatialPointsDataFrame bbox clusterEvalQ coordinates foreach
  makeCluster proj4string proj4string<- registerDoParallel stopCluster
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [12s] OK
** running examples for arch 'x64' ... [20s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ... [13s] OK
  Running 'meuse_psgp.R' [7s]
  Comparing 'meuse_psgp.Rout' to 'meuse_psgp.Rout.save' ...20a21,26
> rgdal: version: 0.8-16, (SVN revision 498)
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
> Path to GDAL shared files: /usr/share/gdal/1.9
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: (autodetected)
28,30c34,36
< Range: 716.689613
< Sill: 0.766265
< Nugget: 0.007453
---
> Range: 716.729191
> Sill: 0.766279
> Nugget: 0.007457
347,348c353,354
<    Range  (P0) :716.689613
<    Variance  (P1) :0.766265
---
>    Range  (P0) :716.729191
>    Variance  (P1) :0.766279
351,352c357,358
<    Length scale  (P0) :716.689613
<    Variance  (P1) :0.766265
---
>    Length scale  (P0) :716.729191
>    Variance  (P1) :0.766279
358,363c364,369
<    Variance  (P0) :0.007453
< Finding optimal parametersCycle 1   Error 101.037816  Scale 1.000000
< Cycle 2   Error 99.255324  Scale 0.500000
< Cycle 3   Error 99.087178  Scale 0.250000
< Cycle 4   Error 98.048341  Scale 0.125000
< Cycle 5   Error 98.003433  Scale 0.062500
---
>    Variance  (P0) :0.007457
> Finding optimal parametersCycle 1   Error 101.037136  Scale 1.000000
> Cycle 2   Error 99.254923  Scale 0.500000
> Cycle 3   Error 99.086845  Scale 0.250000
> Cycle 4   Error 98.047846  Scale 0.125000
> Cycle 5   Error 98.002947  Scale 0.062500
365,369c371,375
< Cycle 1   Error 97.968895  Scale 1.000000
< Cycle 2   Error 97.507592  Scale 0.500000
< Cycle 3   Error 97.495123  Scale 0.250000
< Cycle 4   Error 97.495123  Scale 0.125000
< Cycle 5   Error 97.167710  Scale 0.500000
---
> Cycle 1   Error 97.968412  Scale 1.000000
> Cycle 2   Error 97.507097  Scale 0.500000
> Cycle 3   Error 97.494582  Scale 0.250000
> Cycle 4   Error 97.494582  Scale 0.125000
> Cycle 5   Error 97.167484  Scale 0.500000
371,375c377,381
< Cycle 1   Error 97.139195  Scale 1.000000
< Cycle 2   Error 97.044461  Scale 0.500000
< Cycle 3   Error 97.035602  Scale 0.250000
< Cycle 4   Error 97.023475  Scale 0.125000
< Cycle 5   Error 97.021581  Scale 0.062500
---
> Cycle 1   Error 97.138869  Scale 1.000000
> Cycle 2   Error 97.044464  Scale 0.500000
> Cycle 3   Error 97.035699  Scale 0.250000
> Cycle 4   Error 97.023483  Scale 0.125000
> Cycle 5   Error 97.021590  Scale 0.062500
704,705c710,711
<    Range  (P0) :853.589276
<    Variance  (P1) :1.070229
---
>    Range  (P0) :853.719578
>    Variance  (P1) :1.070282
708,709c714,715
<    Length scale  (P0) :1307.069146
<    Variance  (P1) :0.881427
---
>    Length scale  (P0) :1306.632730
>    Variance  (P1) :0.881519
712c718
<    Amplitude  (P0) :0.023701
---
>    Amplitude  (P0) :0.023702
  Running 'psgp.R' [6s]
  Comparing 'psgp.Rout' to 'psgp.Rout.save' ...26,28c26,28
< Range: 716.689613
< Sill: 0.766265
< Nugget: 0.007453
---
> Range: 716.729191
> Sill: 0.766279
> Nugget: 0.007457
345,346c345,346
<    Range  (P0) :716.689613
<    Variance  (P1) :0.766265
---
>    Range  (P0) :716.729191
>    Variance  (P1) :0.766279
349,350c349,350
<    Length scale  (P0) :716.689613
<    Variance  (P1) :0.766265
---
>    Length scale  (P0) :716.729191
>    Variance  (P1) :0.766279
356,361c356,361
<    Variance  (P0) :0.007453
< Finding optimal parametersCycle 1   Error 101.037816  Scale 1.000000
< Cycle 2   Error 99.255324  Scale 0.500000
< Cycle 3   Error 99.087178  Scale 0.250000
< Cycle 4   Error 98.048341  Scale 0.125000
< Cycle 5   Error 98.003433  Scale 0.062500
---
>    Variance  (P0) :0.007457
> Finding optimal parametersCycle 1   Error 101.037136  Scale 1.000000
> Cycle 2   Error 99.254923  Scale 0.500000
> Cycle 3   Error 99.086845  Scale 0.250000
> Cycle 4   Error 98.047846  Scale 0.125000
> Cycle 5   Error 98.002947  Scale 0.062500
363,367c363,367
< Cycle 1   Error 97.968895  Scale 1.000000
< Cycle 2   Error 97.507592  Scale 0.500000
< Cycle 3   Error 97.495123  Scale 0.250000
< Cycle 4   Error 97.495123  Scale 0.125000
< Cycle 5   Error 97.167710  Scale 0.500000
---
> Cycle 1   Error 97.968412  Scale 1.000000
> Cycle 2   Error 97.507097  Scale 0.500000
> Cycle 3   Error 97.494582  Scale 0.250000
> Cycle 4   Error 97.494582  Scale 0.125000
> Cycle 5   Error 97.167484  Scale 0.500000
369,373c369,373
< Cycle 1   Error 97.139195  Scale 1.000000
< Cycle 2   Error 97.044461  Scale 0.500000
< Cycle 3   Error 97.035602  Scale 0.250000
< Cycle 4   Error 97.023475  Scale 0.125000
< Cycle 5   Error 97.021581  Scale 0.062500
---
> Cycle 1   Error 97.138869  Scale 1.000000
> Cycle 2   Error 97.044464  Scale 0.500000
> Cycle 3   Error 97.035699  Scale 0.250000
> Cycle 4   Error 97.023483  Scale 0.125000
> Cycle 5   Error 97.021590  Scale 0.062500
694,695c694,695
<    Range  (P0) :853.589279
<    Variance  (P1) :1.070229
---
>    Range  (P0) :853.719573
>    Variance  (P1) :1.070282
698,699c698,699
<    Length scale  (P0) :1307.069141
<    Variance  (P1) :0.881427
---
>    Length scale  (P0) :1306.632744
>    Variance  (P1) :0.881519
702c702
<    Amplitude  (P0) :0.023701
---
>    Amplitude  (P0) :0.023702
703a704,709
> rgdal: version: 0.8-16, (SVN revision 498)
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
> Path to GDAL shared files: /usr/share/gdal/1.9
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: (autodetected)
708c714
<  Min.   :179019   Min.   :330013   Min.   :4.764   Min.   :0.03598  
---
>  Min.   :179019   Min.   :330013   Min.   :4.764   Min.   :0.03600  
711,713c717,719
<  Mean   :180183   Mean   :331644   Mean   :6.257   Mean   :0.48075  
<  3rd Qu.:180882   3rd Qu.:332459   3rd Qu.:7.478   3rd Qu.:0.69737  
<  Max.   :181348   Max.   :333275   Max.   :8.178   Max.   :1.91163  
---
>  Mean   :180183   Mean   :331644   Mean   :6.256   Mean   :0.48082  
>  3rd Qu.:180882   3rd Qu.:332459   3rd Qu.:7.477   3rd Qu.:0.69749  
>  Max.   :181348   Max.   :333275   Max.   :8.177   Max.   :1.91187  
716,719c722,725
<  1st Qu.:0.0549899   1st Qu.:0.01972   1st Qu.:4.638  
<  Median :0.4629025   Median :0.53710   Median :5.227  
<  Mean   :0.5165062   Mean   :0.48349   Mean   :5.491  
<  3rd Qu.:0.9802802   3rd Qu.:0.94501   3rd Qu.:6.480  
---
>  1st Qu.:0.0549834   1st Qu.:0.01972   1st Qu.:4.638  
>  Median :0.4628215   Median :0.53718   Median :5.228  
>  Mean   :0.5164844   Mean   :0.48352   Mean   :5.491  
>  3rd Qu.:0.9802752   3rd Qu.:0.94502   3rd Qu.:6.480  
731,737c737,738
<      value      
<  Min.   :4.727  
<  1st Qu.:5.288  
<  Median :5.787  
<  Mean   :5.886  
<  3rd Qu.:6.514  
<  Max.   :7.517  
---
>    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
>   4.727   5.288   5.787   5.886   6.514   7.517 
758,759c759,760
< 1   Nug 0.04848089   0.0000
< 2   Sph 0.58754741 889.9084
---
> 1   Nug 0.04847876   0.0000
> 2   Sph 0.58754476 889.8912
** running tests for arch 'x64' ... [20s] OK
  Running 'meuse_psgp.R' [10s]
  Comparing 'meuse_psgp.Rout' to 'meuse_psgp.Rout.save' ...20a21,26
> rgdal: version: 0.8-16, (SVN revision 498)
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
> Path to GDAL shared files: /usr/share/gdal/1.9
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: (autodetected)
28,30c34,36
< Range: 716.689613
< Sill: 0.766265
< Nugget: 0.007453
---
> Range: 716.729191
> Sill: 0.766279
> Nugget: 0.007457
347,348c353,354
<    Range  (P0) :716.689613
<    Variance  (P1) :0.766265
---
>    Range  (P0) :716.729191
>    Variance  (P1) :0.766279
351,352c357,358
<    Length scale  (P0) :716.689613
<    Variance  (P1) :0.766265
---
>    Length scale  (P0) :716.729191
>    Variance  (P1) :0.766279
358,363c364,369
<    Variance  (P0) :0.007453
< Finding optimal parametersCycle 1   Error 101.037816  Scale 1.000000
< Cycle 2   Error 99.255324  Scale 0.500000
< Cycle 3   Error 99.087178  Scale 0.250000
< Cycle 4   Error 98.048341  Scale 0.125000
< Cycle 5   Error 98.003433  Scale 0.062500
---
>    Variance  (P0) :0.007457
> Finding optimal parametersCycle 1   Error 101.037136  Scale 1.000000
> Cycle 2   Error 99.254923  Scale 0.500000
> Cycle 3   Error 99.086845  Scale 0.250000
> Cycle 4   Error 98.047846  Scale 0.125000
> Cycle 5   Error 98.002947  Scale 0.062500
365,369c371,375
< Cycle 1   Error 97.968895  Scale 1.000000
< Cycle 2   Error 97.507592  Scale 0.500000
< Cycle 3   Error 97.495123  Scale 0.250000
< Cycle 4   Error 97.495123  Scale 0.125000
< Cycle 5   Error 97.167710  Scale 0.500000
---
> Cycle 1   Error 97.968412  Scale 1.000000
> Cycle 2   Error 97.507097  Scale 0.500000
> Cycle 3   Error 97.494582  Scale 0.250000
> Cycle 4   Error 97.494582  Scale 0.125000
> Cycle 5   Error 97.167484  Scale 0.500000
371,375c377,381
< Cycle 1   Error 97.139195  Scale 1.000000
< Cycle 2   Error 97.044461  Scale 0.500000
< Cycle 3   Error 97.035602  Scale 0.250000
< Cycle 4   Error 97.023475  Scale 0.125000
< Cycle 5   Error 97.021581  Scale 0.062500
---
> Cycle 1   Error 97.138869  Scale 1.000000
> Cycle 2   Error 97.044464  Scale 0.500000
> Cycle 3   Error 97.035699  Scale 0.250000
> Cycle 4   Error 97.023483  Scale 0.125000
> Cycle 5   Error 97.021590  Scale 0.062500
704,705c710,711
<    Range  (P0) :853.589269
<    Variance  (P1) :1.070229
---
>    Range  (P0) :853.719578
>    Variance  (P1) :1.070282
708,709c714,715
<    Length scale  (P0) :1307.069155
<    Variance  (P1) :0.881427
---
>    Length scale  (P0) :1306.632730
>    Variance  (P1) :0.881519
712c718
<    Amplitude  (P0) :0.023701
---
>    Amplitude  (P0) :0.023702
  Running 'psgp.R' [10s]
  Comparing 'psgp.Rout' to 'psgp.Rout.save' ...26,28c26,28
< Range: 716.689613
< Sill: 0.766265
< Nugget: 0.007453
---
> Range: 716.729191
> Sill: 0.766279
> Nugget: 0.007457
345,346c345,346
<    Range  (P0) :716.689613
<    Variance  (P1) :0.766265
---
>    Range  (P0) :716.729191
>    Variance  (P1) :0.766279
349,350c349,350
<    Length scale  (P0) :716.689613
<    Variance  (P1) :0.766265
---
>    Length scale  (P0) :716.729191
>    Variance  (P1) :0.766279
356,361c356,361
<    Variance  (P0) :0.007453
< Finding optimal parametersCycle 1   Error 101.037816  Scale 1.000000
< Cycle 2   Error 99.255324  Scale 0.500000
< Cycle 3   Error 99.087178  Scale 0.250000
< Cycle 4   Error 98.048341  Scale 0.125000
< Cycle 5   Error 98.003433  Scale 0.062500
---
>    Variance  (P0) :0.007457
> Finding optimal parametersCycle 1   Error 101.037136  Scale 1.000000
> Cycle 2   Error 99.254923  Scale 0.500000
> Cycle 3   Error 99.086845  Scale 0.250000
> Cycle 4   Error 98.047846  Scale 0.125000
> Cycle 5   Error 98.002947  Scale 0.062500
363,367c363,367
< Cycle 1   Error 97.968895  Scale 1.000000
< Cycle 2   Error 97.507592  Scale 0.500000
< Cycle 3   Error 97.495123  Scale 0.250000
< Cycle 4   Error 97.495123  Scale 0.125000
< Cycle 5   Error 97.167710  Scale 0.500000
---
> Cycle 1   Error 97.968412  Scale 1.000000
> Cycle 2   Error 97.507097  Scale 0.500000
> Cycle 3   Error 97.494582  Scale 0.250000
> Cycle 4   Error 97.494582  Scale 0.125000
> Cycle 5   Error 97.167484  Scale 0.500000
369,373c369,373
< Cycle 1   Error 97.139195  Scale 1.000000
< Cycle 2   Error 97.044461  Scale 0.500000
< Cycle 3   Error 97.035602  Scale 0.250000
< Cycle 4   Error 97.023475  Scale 0.125000
< Cycle 5   Error 97.021581  Scale 0.062500
---
> Cycle 1   Error 97.138869  Scale 1.000000
> Cycle 2   Error 97.044464  Scale 0.500000
> Cycle 3   Error 97.035699  Scale 0.250000
> Cycle 4   Error 97.023483  Scale 0.125000
> Cycle 5   Error 97.021590  Scale 0.062500
694,695c694,695
<    Range  (P0) :853.589268
<    Variance  (P1) :1.070229
---
>    Range  (P0) :853.719573
>    Variance  (P1) :1.070282
698,699c698,699
<    Length scale  (P0) :1307.069156
<    Variance  (P1) :0.881427
---
>    Length scale  (P0) :1306.632744
>    Variance  (P1) :0.881519
702c702
<    Amplitude  (P0) :0.023701
---
>    Amplitude  (P0) :0.023702
703a704,709
> rgdal: version: 0.8-16, (SVN revision 498)
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
> Path to GDAL shared files: /usr/share/gdal/1.9
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: (autodetected)
708c714
<  Min.   :179019   Min.   :330013   Min.   :4.764   Min.   :0.03598  
---
>  Min.   :179019   Min.   :330013   Min.   :4.764   Min.   :0.03600  
711,713c717,719
<  Mean   :180183   Mean   :331644   Mean   :6.257   Mean   :0.48075  
<  3rd Qu.:180882   3rd Qu.:332459   3rd Qu.:7.478   3rd Qu.:0.69737  
<  Max.   :181348   Max.   :333275   Max.   :8.178   Max.   :1.91163  
---
>  Mean   :180183   Mean   :331644   Mean   :6.256   Mean   :0.48082  
>  3rd Qu.:180882   3rd Qu.:332459   3rd Qu.:7.477   3rd Qu.:0.69749  
>  Max.   :181348   Max.   :333275   Max.   :8.177   Max.   :1.91187  
716,719c722,725
<  1st Qu.:0.0549899   1st Qu.:0.01972   1st Qu.:4.638  
<  Median :0.4629025   Median :0.53710   Median :5.227  
<  Mean   :0.5165062   Mean   :0.48349   Mean   :5.491  
<  3rd Qu.:0.9802802   3rd Qu.:0.94501   3rd Qu.:6.480  
---
>  1st Qu.:0.0549834   1st Qu.:0.01972   1st Qu.:4.638  
>  Median :0.4628215   Median :0.53718   Median :5.228  
>  Mean   :0.5164844   Mean   :0.48352   Mean   :5.491  
>  3rd Qu.:0.9802752   3rd Qu.:0.94502   3rd Qu.:6.480  
731,737c737,738
<      value      
<  Min.   :4.727  
<  1st Qu.:5.288  
<  Median :5.787  
<  Mean   :5.886  
<  3rd Qu.:6.514  
<  Max.   :7.517  
---
>    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
>   4.727   5.288   5.787   5.886   6.514   7.517 
758,759c759,760
< 1   Nug 0.04848089   0.0000
< 2   Sph 0.58754741 889.9084
---
> 1   Nug 0.04847876   0.0000
> 2   Sph 0.58754476 889.8912
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [6s] OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs