* using log directory 'd:/Rcompile/CRANpkg/local/3.3/qPCR.CT.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'qPCR.CT/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'qPCR.CT' version '1.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'qPCR.CT' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE NB: .First.lib is obsolete and will not be used in R >= 3.0.0 Calc.Expr: no visible global function definition for 'read.csv' Calc.Expr: no visible binding for global variable 'Type' Calc.Expr: no visible binding for global variable 'Identifier' Calc.Expr: no visible binding for global variable 'Fluor' GroupPlot: no visible global function definition for 'read.csv' GroupPlot: no visible binding for global variable 'Type' GroupPlot: no visible global function definition for 'aggregate.data.frame' plot.CT: no visible global function definition for 'sd' plot.CT: no visible global function definition for 'barplot' plot.CT: no visible binding for global variable 'tr_gene_name' plot.CT : errorbars: no visible global function definition for 'arrows' plot.CT: no visible global function definition for 'box' Undefined global functions or variables: Fluor Identifier Type aggregate.data.frame arrows barplot box read.csv sd tr_gene_name Consider adding importFrom("graphics", "arrows", "barplot", "box") importFrom("stats", "aggregate.data.frame", "sd") importFrom("utils", "read.csv") to your NAMESPACE file. * checking Rd files ... NOTE prepare_Rd: Calc.Expr.Rd:38-40: Dropping empty section \details prepare_Rd: Calc.Expr.Rd:41-47: Dropping empty section \value prepare_Rd: Calc.Expr.Rd:54-56: Dropping empty section \note prepare_Rd: Calc.Expr.Rd:48-50: Dropping empty section \references prepare_Rd: Calc.Expr.Rd:60-62: Dropping empty section \seealso prepare_Rd: GroupPlot.Rd:34-36: Dropping empty section \details prepare_Rd: GroupPlot.Rd:37-43: Dropping empty section \value prepare_Rd: GroupPlot.Rd:50-52: Dropping empty section \note prepare_Rd: GroupPlot.Rd:44-46: Dropping empty section \references prepare_Rd: GroupPlot.Rd:56-58: Dropping empty section \seealso prepare_Rd: cal.CT.Rd:18-20: Dropping empty section \details prepare_Rd: cal.CT.Rd:21-23: Dropping empty section \source prepare_Rd: cal_ct.Rd:48-50: Dropping empty section \note prepare_Rd: cal_ct.Rd:42-44: Dropping empty section \references prepare_Rd: cal_ct.Rd:54-56: Dropping empty section \seealso prepare_Rd: filename.Rd:16-18: Dropping empty section \references prepare_Rd: plot.CT.Rd:25-27: Dropping empty section \details prepare_Rd: plot.CT.Rd:28-34: Dropping empty section \value prepare_Rd: plot.CT.Rd:41-43: Dropping empty section \note prepare_Rd: plot.CT.Rd:35-37: Dropping empty section \references prepare_Rd: plot.CT.Rd:47-49: Dropping empty section \seealso prepare_Rd: repeatnum.Rd:15-17: Dropping empty section \details prepare_Rd: repeatnum.Rd:18-20: Dropping empty section \source prepare_Rd: repeatnum.Rd:21-23: Dropping empty section \references prepare_Rd: tr_gene_name.Rd:15-17: Dropping empty section \details prepare_Rd: tr_gene_name.Rd:18-20: Dropping empty section \source prepare_Rd: tr_gene_name.Rd:21-23: Dropping empty section \references prepare_Rd: tr_group_name.Rd:15-17: Dropping empty section \details prepare_Rd: tr_group_name.Rd:18-20: Dropping empty section \source prepare_Rd: tr_group_name.Rd:21-23: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [0s] OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs