* using log directory 'd:/Rcompile/CRANpkg/local/3.3/qrfactor.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'qrfactor/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'qrfactor' version '1.4' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'qrfactor' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plot.qrfactor : sp.label: no visible global function definition for 'coordinates' plot.qrfactor: no visible global function definition for 'slot' plot.qrfactor: no visible global function definition for 'slot<-' plot.qrfactor: no visible global function definition for 'text' plot.qrfactor: no visible global function definition for 'layout' plot.qrfactor: no visible global function definition for 'kmeans' plot.qrfactor: no visible global function definition for 'polygon' plot.qrfactor: no visible global function definition for 'points' plot.qrfactor: no visible global function definition for 'mahalanobis' plot.qrfactor: no visible global function definition for 'qqplot' plot.qrfactor: no visible global function definition for 'qchisq' plot.qrfactor: no visible global function definition for 'ppoints' plot.qrfactor: no visible global function definition for 'spplot' plot.qrfactor: no visible global function definition for 'bpy.colors' plot.qrfactor: no visible global function definition for 'gray.colors' plot.qrfactor: no visible global function definition for 'aggregate' plot.qrfactor: no visible global function definition for 'aov' plot.qrfactor: no visible global function definition for 'kruskal.test' plot.qrfactor: no visible global function definition for 'dist' plot.qrfactor: no visible global function definition for 'hclust' plot.qrfactor: no visible global function definition for 'rect.hclust' plot.qrfactor: no visible global function definition for 'na.omit' plot.qrfactor: no visible global function definition for 'readOGR' plot.qrfactor: no visible global function definition for 'wilcox.test' plot.qrfactor: no visible global function definition for 'TukeyHSD' rq: no visible global function definition for 'readOGR' rq: no visible global function definition for 'slot' rq: no visible global function definition for 'read.csv' rq: no visible global function definition for 'read.table' rq: no visible global function definition for 'slot<-' rq: no visible global function definition for 'na.omit' rq: no visible global function definition for 'cor' rq: no visible global function definition for 'kmeans' Undefined global functions or variables: TukeyHSD aggregate aov bpy.colors coordinates cor dist gray.colors hclust kmeans kruskal.test layout mahalanobis na.omit points polygon ppoints qchisq qqplot read.csv read.table readOGR rect.hclust slot slot<- spplot text wilcox.test Consider adding importFrom("grDevices", "gray.colors") importFrom("graphics", "layout", "points", "polygon", "text") importFrom("methods", "slot", "slot<-") importFrom("stats", "TukeyHSD", "aggregate", "aov", "cor", "dist", "hclust", "kmeans", "kruskal.test", "mahalanobis", "na.omit", "ppoints", "qchisq", "qqplot", "rect.hclust", "wilcox.test") importFrom("utils", "read.csv", "read.table") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [6s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [42s] OK Running 'MDS.R' [5s] Running 'PCA.R' [5s] Running 'PCO.R' [5s] Running 'merge.R' [0s] Running 'plot.R' [5s] Running 'q-mode.R' [4s] Running 'qrfactor.R' [7s] Running 'qrmode.R' [6s] Running 'r-mode.R' [5s] * checking PDF version of manual ... OK * DONE Status: 2 NOTEs