* using log directory 'd:/Rcompile/CRANpkg/local/3.3/rgp.Rcheck'
* using R version 3.3.2 (2016-10-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'rgp/DESCRIPTION' ... OK
* this is package 'rgp' version '0.4-1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rgp' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'igraph' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.onAttach: no visible global function definition for 'sessionInfo'
.onLoad : <anonymous>: no visible global function definition for
  'rnorm'
crossoverexpr: no visible global function definition for 'runif'
crossoverexprTwoPoint: no visible global function definition for
  'runif'
crossoverexprTyped: no visible global function definition for 'runif'
customDist: no visible global function definition for 'as.dist'
dataDrivenGeneticProgramming: no visible global function definition for
  'model.frame'
dataDrivenGeneticProgramming: no visible global function definition for
  'terms'
embedDataFrame : <anonymous>: no visible global function definition for
  'embed'
exprToIgraph: no visible global function definition for 'graph'
exprToIgraph: no visible global function definition for 'V'
exprToIgraph: no visible global function definition for 'V<-'
makeAgeFitnessComplexityParetoGpSearchHeuristic : <anonymous>: no
  visible global function definition for 'runif'
makeAgeFitnessComplexityParetoGpSearchHeuristic : <anonymous> :
  <anonymous>: no visible global function definition for 'runif'
makeArchiveBasedParetoTournamentSearchHeuristic : <anonymous>: no
  visible global function definition for 'runif'
makeFitnessDistributionRestartCondition : stopCondition: no visible
  global function definition for 'sd'
makeFitnessStagnationRestartCondition : stopCondition: no visible
  global function definition for 'sd'
makeHierarchicalClusterFunction : <anonymous>: no visible global
  function definition for 'cutree'
makeHierarchicalClusterFunction : <anonymous>: no visible global
  function definition for 'hclust'
makeRegressionFitnessFunction: no visible global function definition
  for 'na.omit'
makeRegressionFitnessFunction: no visible global function definition
  for 'terms'
makeTinyGpSearchHeuristic : <anonymous>: no visible global function
  definition for 'runif'
multiNicheGeneticProgramming: no visible binding for global variable
  'sfClusterApplyLB'
multiNicheGeneticProgramming: no visible binding for global variable
  'sfExport'
multiNicheSymbolicRegression: no visible binding for global variable
  'sfClusterApplyLB'
multiNicheSymbolicRegression: no visible binding for global variable
  'sfExport'
multiNicheSymbolicRegression: no visible global function definition for
  'model.frame'
multiNicheSymbolicRegression: no visible global function definition for
  'terms'
mutateChangeLabel : mutateExpressionChangeLabel: no visible global
  function definition for 'runif'
mutateChangeLabel : mutateExpressionChangeLabel: no visible global
  function definition for 'rnorm'
mutateChangeLabel : mutateExpressionChangeLabel: no visible global
  function definition for 'rbinom'
mutateDeleteSubtree : mutateExpressionDeleteSubtree: no visible global
  function definition for 'runif'
mutateFunc : mutatefuncexpr: no visible global function definition for
  'runif'
mutateFuncTyped : mutatefuncexprTyped: no visible global function
  definition for 'runif'
mutateInsertSubtree : mutateExpressionInsertSubtree: no visible global
  function definition for 'runif'
mutateNumericConst : mutateconstexpr: no visible global function
  definition for 'runif'
mutateNumericConst : mutateconstexpr: no visible global function
  definition for 'rnorm'
mutateNumericConstTyped : mutateconstexprTyped: no visible global
  function definition for 'runif'
mutateNumericConstTyped : mutateconstexprTyped: no visible global
  function definition for 'rnorm'
mutateSubtree : mutatesubtreeexpr: no visible global function
  definition for 'runif'
mutateSubtreeTyped : mutatesubtreeexprTyped: no visible global function
  definition for 'runif'
nondeterministicRanking : indexPmf: no visible global function
  definition for 'runif'
normalizedDesign: no visible global function definition for 'runif'
normalizedDesign: no visible global function definition for 'dist'
paretoFrontKneeIndex: no visible global function definition for
  'na.omit'
paretoFrontKneeIndex: no visible global function definition for 'dist'
plotFunction3d: no visible global function definition for 'gray.colors'
plotFunction3d: no visible global function definition for 'persp'
plotFunctions: no visible global function definition for 'par'
plotFunctions: no visible global function definition for 'matplot'
plotFunctions: no visible global function definition for 'legend'
plotParetoFront: no visible global function definition for 'colorRamp'
plotParetoFront: no visible global function definition for 'rgb'
plotParetoFront: no visible global function definition for 'plot'
plotParetoFront: no visible global function definition for 'points'
plotPopulationFitnessComplexity: no visible global function definition
  for 'quantile'
plotPopulationFitnessComplexity: no visible global function definition
  for 'IQR'
plotPopulationFitnessComplexity: no visible global function definition
  for 'plot'
plotPopulationFitnessComplexity: no visible global function definition
  for 'text'
predict.symbolicRegressionModel: no visible global function definition
  for 'na.omit'
predict.symbolicRegressionModel: no visible global function definition
  for 'terms'
r_ssse: no visible global function definition for 'cov'
r_ssse: no visible global function definition for 'var'
randchild: no visible global function definition for 'runif'
randexprGrow: no visible global function definition for 'runif'
randexprTypedGrow: no visible global function definition for 'runif'
randfuncRampedHalfAndHalf: no visible global function definition for
  'runif'
randfuncTypedRampedHalfAndHalf: no visible global function definition
  for 'runif'
randomIndex: no visible global function definition for 'runif'
randsubtree: no visible global function definition for 'runif'
randterminalTyped: no visible global function definition for 'runif'
seSymbolic: no visible global function definition for 'integrate'
Undefined global functions or variables:
  IQR V V<- as.dist colorRamp cov cutree dist embed graph gray.colors
  hclust integrate legend matplot model.frame na.omit par persp plot
  points quantile rbinom rgb rnorm runif sd sessionInfo
  sfClusterApplyLB sfExport terms text var
Consider adding
  importFrom("grDevices", "colorRamp", "gray.colors", "rgb")
  importFrom("graphics", "legend", "matplot", "par", "persp", "plot",
             "points", "text")
  importFrom("stats", "IQR", "as.dist", "cov", "cutree", "dist", "embed",
             "hclust", "integrate", "model.frame", "na.omit", "quantile",
             "rbinom", "rnorm", "runif", "sd", "terms", "var")
  importFrom("utils", "sessionInfo")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
mpiler/texmf/fonts/type1/public/amsfonts/cm/cmr8.pfb><D:/Compiler/texmf/fonts/t
ype1/public/amsfonts/cm/cmr9.pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts
/cm/cmsltt10.pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmss10.pfb><
D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmss8.pfb><D:/Compiler/texmf/f
onts/type1/public/amsfonts/cm/cmss9.pfb><D:/Compiler/texmf/fonts/type1/public/a
msfonts/cm/cmsy10.pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmti10.
pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmti12.pfb><D:/Compiler/t
exmf/fonts/type1/public/amsfonts/cm/cmtt10.pfb><D:/Compiler/texmf/fonts/type1/p
ublic/amsfonts/cm/cmtt8.pfb><D:/Compiler/texmf/fonts/type1/public/mathpazo/fplm
ri.pfb><D:/Compiler/texmf/fonts/type1/public/cm-super/sfrm0900.pfb><D:/Compiler
/texmf/fonts/type1/public/cm-super/sfrm1000.pfb><D:/Compiler/texmf/fonts/type1/
urw/palatino/uplr8a.pfb><D:/Compiler/texmf/fonts/type1/urw/palatino/uplri8a.pfb
>
Output written on rgp_introduction.pdf (16 pages, 430970 bytes).
Transcript written on rgp_introduction.log.
"D:/RCompile/recent/R-33~1.2/bin/Rscript" -e "tools::compactPDF('rgp_introduction.pdf', gs_quality='ebook')"
  compacted 'rgp_introduction.pdf' from 421Kb to 205Kb
rm -f Rplots.pdf
rm: cannot remove 'Rplots.pdf': Device or resource busy
make[1]: *** [pdf] Error 1
make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/3.3/rgp.Rcheck/vign_test/rgp/vignettes'
Warning: running command 'make' had status 2
Error in buildVignettes(dir = "d:/Rcompile/CRANpkg/local/3.3/rgp.Rcheck/vign_test/rgp") : 
  running 'make' failed
Execution halted

* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs