* using log directory 'd:/Rcompile/CRANpkg/local/3.3/spacejam.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'spacejam/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'spacejam' version '1.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'spacejam' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'Matrix' which was already attached by Depends. Please remove these calls from your code. Packages in Depends field not imported from: 'Matrix' 'igraph' 'splines' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE SJ: no visible binding for global variable 'bs' SJ: no visible global function definition for 'get.adjacency' SJ : : no visible global function definition for 'graph.adjacency' SJ: no visible binding for global variable 'ecount' SJ.dag: no visible binding for global variable 'bs' SJ.dag : : no visible global function definition for 'graph.adjacency' SJ.dag: no visible binding for global variable 'ecount' SJpath: no visible global function definition for 'get.adjacency' SJpath : : no visible global function definition for 'graph.adjacency' generate.dag.data: no visible global function definition for 'vcount' generate.dag.data: no visible global function definition for 'topological.sort' generate.dag.data: no visible global function definition for 'neighbors' generate.dag.data: no visible global function definition for 'rnorm' generate.dag.data: no visible global function definition for 'runif' grpsel: no visible global function definition for 'Matrix' moralize: no visible global function definition for 'vcount' moralize: no visible global function definition for 'as.undirected' moralize: no visible global function definition for 'get.adjacency' moralize: no visible global function definition for 'add.edges' moralize: no visible global function definition for 'combn' moralize: no visible global function definition for 'simplify' plot.SJ: no visible global function definition for 'layout.fruchterman.reingold' plot.SJ: no visible global function definition for 'plot' plot.SJ.dag: no visible global function definition for 'layout.fruchterman.reingold' plot.SJ.dag: no visible global function definition for 'plot' print.SJ: no visible binding for global variable 'ecount' print.SJ: no visible global function definition for 'ecount' print.SJ.dag: no visible binding for global variable 'ecount' print.SJ.dag: no visible global function definition for 'ecount' rdag: no visible global function definition for 'graph.adjacency' Undefined global functions or variables: Matrix add.edges as.undirected bs combn ecount get.adjacency graph.adjacency layout.fruchterman.reingold neighbors plot rnorm runif simplify topological.sort vcount Consider adding importFrom("graphics", "plot") importFrom("stats", "rnorm", "runif") importFrom("utils", "combn") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [41s] OK ** running examples for arch 'x64' ... [39s] OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs