* using log directory 'd:/Rcompile/CRANpkg/local/3.3/stashR.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'stashR/DESCRIPTION' ... OK * this is package 'stashR' version '0.3-5' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'stashR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... NOTE Warning: no function found corresponding to methods exports from 'stashR' for: 'initialize' A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'methods' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE cacheVersionFile: no visible global function definition for 'download.file' getdata: no visible global function definition for 'download.file' copyDB,localDB: no visible global function definition for 'new' initialize,localDB: no visible global function definition for 'callNextMethod' initialize,remoteDB: no visible global function definition for 'callNextMethod' Undefined global functions or variables: callNextMethod download.file new Consider adding importFrom("methods", "callNextMethod", "new") importFrom("utils", "download.file") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [0s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ERROR Running the tests in 'tests/tests.R' failed. Last 13 lines of output: > ## is not available > > myurl <- "http://www.biostat.jhsph.edu/MCAPS/data_v0.3/" > > ## create a 'remoteDB' object ## > db <- new("remoteDB", url= myurl, dir = dir, name= "MCAPS") Error in download.file(rpath, versionFile(db, where = "local"), mode = "w", : cannot open URL 'http://www.biostat.jhsph.edu/MCAPS/data_v0.3/version' Calls: new ... initialize -> initialize -> cacheVersionFile -> download.file In addition: Warning message: In download.file(rpath, versionFile(db, where = "local"), mode = "w", : cannot open URL 'http://www.biostat.jhsph.edu/MCAPS/data_v0.3/version': HTTP status was '404 Not Found' Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 4 NOTEs