* using log directory 'd:/Rcompile/CRANpkg/local/3.3/svcm.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'svcm/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'svcm' version '0.1.2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'svcm' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... NOTE Calls with DUP: .C("myInversion", Senv$diag, Senv$env, Senv$xenv, Senv$N, Senv$Nenv, Senv$Nplus1, DUP = FALSE, PACKAGE = "svcm") .C("myTrace", Senv$diag, Senv$env, Senv$xenv, Senv$N, Senv$Nenv, Senv$Nplus1, BBenv$diag, BBenv$env, BBenv$xenv, BBenv$N, BBenv$Nenv, BBenv$Nplus1, ED = ED, DUP = FALSE, PACKAGE = "svcm") .C("dsC2env", N, A@x, as.integer(A@i), as.integer(A@p), diagvec = diagvec, env = env, xenv = as.integer(xenv), DUP = FALSE) DUP is no longer supported and will be ignored. * checking R code for possible problems ... NOTE EDofTP: warning in assign("ED", ED, env = svcm.env): partial argument match of 'env' to 'envir' predictsvcm: warning in assign("S", S, env = svcm.env): partial argument match of 'env' to 'envir' predictsvcm: warning in assign("A", as.vector(A), env = svcm.env): partial argument match of 'env' to 'envir' predictsvcm: warning in assign("eta", eta, env = svcm.env): partial argument match of 'env' to 'envir' predictsvcm: warning in assign("A", A, env = svcm.env): partial argument match of 'env' to 'envir' predictsvcm: warning in assign("ED", ED, env = svcm.env): partial argument match of 'env' to 'envir' targetsvcm: warning in assign("GCVtab", rbind(GCVtab, c(lambda, GCV)), env = svcm.env): partial argument match of 'env' to 'envir' EDofTP: no visible binding for global variable 'S' EDofTP: no visible binding for global variable 'BB' EDofTP: no visible binding for global variable 'svcm.env' dsC2env: no visible global function definition for 'as' predictsvcm: no visible binding for global variable 'P.whole' predictsvcm: no visible binding for global variable 'ndims' predictsvcm: no visible global function definition for 'as' predictsvcm: no visible binding for global variable 'P.x' predictsvcm: no visible binding for global variable 'P.y' predictsvcm: no visible binding for global variable 'P.z' predictsvcm: no visible binding for global variable 'BB' predictsvcm: no visible binding for global variable 'svcm.env' predictsvcm: no visible binding for global variable 'RHS' predictsvcm: no visible binding for global variable 'B' predictsvcm: no visible binding for global variable 'LS.X' predictsvcm: no visible binding for global variable 'Y' predictsvcm: no visible binding for global variable 'X' predictsvcm: no visible binding for global variable 'BB.x' predictsvcm: no visible binding for global variable 'B.x' predictsvcm: no visible binding for global variable 'BB.y' predictsvcm: no visible binding for global variable 'B.y' predictsvcm: no visible binding for global variable 'BB.z' predictsvcm: no visible binding for global variable 'B.z' svcm: no visible global function definition for 'as' svcm: no visible global function definition for 'optimize' svcm: no visible global function definition for 'optim' targetsvcm: no visible binding for global variable 'type' targetsvcm: no visible binding for global variable 'n' targetsvcm: no visible binding for global variable 'y' targetsvcm: no visible binding for global variable 'eta' targetsvcm: no visible binding for global variable 'ED' targetsvcm: no visible binding for global variable 'Y' targetsvcm: no visible binding for global variable 'GCVtab' targetsvcm: no visible binding for global variable 'svcm.env' Undefined global functions or variables: B B.x B.y B.z BB BB.x BB.y BB.z ED GCVtab LS.X P.whole P.x P.y P.z RHS S X Y as eta n ndims optim optimize svcm.env type y Consider adding importFrom("methods", "as") importFrom("stats", "optim", "optimize") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking examples ... ** running examples for arch 'i386' ... [93s] OK ** running examples for arch 'x64' ... [8s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [27s] OK Running 'svcm3d.R' [26s] ** running tests for arch 'x64' ... [3s] OK Running 'svcm3d.R' [3s] * checking PDF version of manual ... OK * DONE Status: 2 NOTEs