* using log directory 'd:/Rcompile/CRANpkg/local/3.3/trimcluster.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'trimcluster/DESCRIPTION' ... OK * this is package 'trimcluster' version '0.1-2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'trimcluster' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'fpc' in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plot.tkm: no visible global function definition for 'plotcluster' plot.tkm: no visible global function definition for 'plot' plot.tkm: no visible global function definition for 'points' plot.tkm: no visible global function definition for 'lines' plot.tkm: no visible global function definition for 'discrcoord' Undefined global functions or variables: discrcoord lines plot plotcluster points Consider adding importFrom("graphics", "lines", "plot", "points") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [0s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [1s] OK Running 'examples.R' [1s] Comparing 'examples.Rout' to 'examples.Rout.save' ...25,27c25,27 < trmkmn+ ii <-ii+1 < trmkmn+ X[ii,] <- c(5,-5)+rnorm(2) < trmkmn+ } --- > ii <- ii + 1 > X[ii, ] <- c(5, -5) + rnorm(2) > } 30,32c30,32 < trmkmn+ ii <- ii+1 < trmkmn+ X[ii,] <- c(5,5)+rnorm(2)*0.75 < trmkmn+ } --- > ii <- ii + 1 > X[ii, ] <- c(5, 5) + rnorm(2) * 0.75 > } 35,37c35,37 < trmkmn+ ii <- ii+1 < trmkmn+ X[ii,] <- c(-5,-5)+rnorm(2)*0.75 < trmkmn+ } --- > ii <- ii + 1 > X[ii, ] <- c(-5, -5) + rnorm(2) * 0.75 > } 40,42c40,42 < trmkmn+ ii <- ii+1 < trmkmn+ X[ii,] <- rnorm(2)*8 < trmkmn+ } --- > ii <- ii + 1 > X[ii, ] <- rnorm(2) * 8 > } 46d45 < trmkmn> # runs=3 is used to save computing time. * checking PDF version of manual ... OK * DONE Status: 2 NOTEs