* using log directory 'd:/Rcompile/CRANpkg/local/3.3/vacem.Rcheck' * using R version 3.3.2 (2016-10-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'vacem/DESCRIPTION' ... OK * this is package 'vacem' version '0.1-1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'vacem' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'foreach' which was already attached by Depends. Please remove these calls from your code. Package in Depends field not imported from: 'foreach' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE constant.post.9mo: no visible global function definition for 'pexp' ll.coverage.optim.const.post.9m: no visible global function definition for 'dexp' make.sample.pop: no visible global function definition for 'runif' mcmc.converge: no visible global function definition for 'par' mcmc.converge: no visible global function definition for 'plot' mcmc.converge: no visible global function definition for 'points' mcmc.converge: no visible global function definition for 'density' mcmc.converge: no visible global function definition for 'lines' mcmc.converge : : no visible global function definition for 'sd' mcmc.estimate : run.chain: no visible global function definition for 'dexp' mcmc.estimate : run.chain: no visible global function definition for 'rnorm' mcmc.estimate : run.chain: no visible global function definition for 'runif' mcmc.estimate : run.chain: no visible global function definition for 'par' mcmc.estimate : run.chain: no visible global function definition for 'plot' mcmc.estimate: no visible global function definition for '%dopar%' mcmc.estimate: no visible global function definition for 'foreach' sim.n.vacc.sample.pop : : no visible global function definition for 'runif' vaccinate.sample.pop: no visible global function definition for 'runif' Undefined global functions or variables: %dopar% density dexp foreach lines par pexp plot points rnorm runif sd Consider adding importFrom("graphics", "lines", "par", "plot", "points") importFrom("stats", "density", "dexp", "pexp", "rnorm", "runif", "sd") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [0s] OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs