Penalized Regression Models with Overlapping Grouped Covariates


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Documentation for package ‘grpregOverlap’ version 2.1-1

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grpregOverlap-package Penalized regression models with overlapping grouped variables.
coef.cv.grpregOverlap Model predictions based on a fitted object
coef.grpregOverlap Model predictions based on a fitted object
cv.grpregOverlap Cross-validation for choosing regularization parameter lambda
cv.grpsurvOverlap Cross-validation for choosing regularization parameter lambda for Cox models.
expandX Expand design matrix according to grouping information
grpregOverlap Fit penalized regression models with overlapping grouped variables
overlapMatrix Compute a matrix indicating overlaps between groups
pathway.dat Gene expression and pathway information of p53 cancer cell lines
plot.cv.grpregOverlap Plots the cross-validation curve from cross-validated object
plot.grpregOverlap Plot object "grpregOverlap"
predict.cv.grpregOverlap Model predictions based on a fitted object
predict.grpregOverlap Model predictions based on a fitted object
predict.grpsurvOverlap Model predictions based on a fitted 'grpsurvOverlap' object.
print.summary.cv.grpregOverlap Summarizing inferences based on cross-validation
select Select an value of lambda along a regularization path
select.grpregOverlap Select an value of lambda along a regularization path
summary.cv.grpregOverlap Summarizing inferences based on cross-validation