R Interface to LibBi


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Documentation for package ‘rbi’ version 0.5.0

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rbi-package RBi - R interface for 'libbi'
absolute_path Absolute Path
bi_dim_len NetCDF dimension length
bi_dim_values NetCDF dimension values
bi_file_summary NetCDF File Summary
bi_generate_dataset Bi Generate Dataset
bi_init_file Create init files for LibBi, retained for backwards compatibility
bi_model Bi Model
bi_model_clone Clones a model (returning a new object with the same properties)
bi_model_fix Fix noise term, state or parameter of a libbi model
bi_model_get_lines Get lines in a libbi model
bi_model_insert_lines Insert lines in a libbi model
bi_model_propose_prior Propose from the prior in a libbi model
bi_model_remove_lines Remove line(s) in a libbi model
bi_model_set_name Set the name of a bi model
bi_model_update_lines Update line(s) in a libbi model
bi_model_write_model_file Writes a bi model to a file.
bi_open Bi open
bi_read Bi Read
bi_write Create (init or observation) files for LibBi
get_traces Get the parameter traces
libbi LibBi Wrapper
libbi_clone Clone a libbi object
libbi_run Using the LibBi wrapper to launch LibBi
log2normw Normalize log weights
merge_by_name Merge lists by name
netcdf_create_from_list Create NetCDF File from R list
option_list Convert string to option list
option_string Convert Options
RBi RBi - R interface for 'libbi'
rbi RBi - R interface for 'libbi'
read_var_input Read variable from NetCDF file.